| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2111 |
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| Symbol | |
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| ID | 4604361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2553180 |
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| End bp | 2554697 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781496 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_927986 |
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| Protein GI | 119775246 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAAG CTAAATTTGT TGAAGGGCCG ATACTGCGCC ACATATTGGT GATGAGCTCC
ACCGCTGCGG TGGGCATTTC GGCACTGTTT TTGGTGGACT TGCTGGATAT CTTCTTTCTG
AGCTTACTCG GGGAAGCGGA GCTTGCCGCG GCCGTGGGAT ACGCAGGTAC CATTTCATTT
TTCACCACGT CCATCGGTAT TGGCTTATCT ATTGCGCTGG GGGCACAGGT GTCCCGTGCC
ATTGGCGCAA GGGAAATCGA CAACGCCAAA CGGCTGCTGA TGAGCTCGCT TCTGGTGACC
CTGGCAGTCT CCTCCCTGGT ATCGTTGCTC GTATCGCTGA ATATCCCAGC ACTGCTGACA
CTGGTGGGCG CCACCGGACA AACGGCAGAG CTTGCCGCGG ACTATCTTTA TATTCTGGTG
CCCTCGCTGC CTTTTATCTG CCTTGCCATG GCCCTTGGCG CTGCACTCAG AGCGGTAGGG
GATGCCAAGC TCTCTATGGT ATCGACTCTG GTGGGGGGCG GCGTCAATCT GGTACTCGAT
CCCATATTGA TTTTTGTGCT TGCCATGGGC ATTGAAGGGG CTGCGGTGGC CTCTGTGCTG
GCGCGTTTAT CAGTGATGTT GGTGGCCGGA CGCGGTGTGT TTGTGAAACA CGGGCTGGGC
AGTAAACCCA CACGCGATGC TTTTGTTGGC GATTTGAAAC CCATTTTCGC CATTGCCGGA
CCGGCCATGA TCACCAATGT GGCAACCCCC ATCGGAAACG GCTTTATGAC CCGCGCCATC
GCTGAATTTG GCGACGCCTA CGTGGCAGGA TGGGCCGTGC TCGGGCGTCT TACCCCCGTG
GCTTTCGGGA TGATATTTGC ACTTTCAGGC GCCATAGGCC CCATCGTTGG ACAGAATTTT
GGTGCCCGGC GCTACGACAG GCTCAGGGAT TGTTTAACCC AATCACTGTT GTTTTGTACT
GTTTATGTGG TGGGTATGGC GCTGGTGCTG TTTCTGGCTC AGGACCTGAT AGTCAGTGCC
TTTGATCTTA AAGGTGATTC GGCTGAATTT ATCGGCTTTT TCCTCACCTA CATCGCCGTG
TTCTTTGTGT TTTCCGGGGC ACTCTTTGTC GCCAATGCAT CGTTCAACAA CCTGGGTAAA
GCCAAGTATT CCACGGTGTT TAATGTGGGC AAGGCGACAC TGGGGACCTT GCCCTTTATC
TGGCTAGGTG CCCAATACGG CGGCGTATAC GGTGTGCTTA TCGGGCAGGT GTTGGGTTCA
GTGCTGTTTG GTGTTGCCGG TGTCTATACC GCCTATCGTC TGGTCGCCTC CTTTGAAAGT
GACCGTAATG CCACAAAGGA AGCGGCCGAC GAAGAGGTGG TGCCTGCCAG TTCCAATCCC
TTGTCGTCAT CCTTTGTGCA GATGGCGACG CACACCGAAG AGAAGGATTG CATAGGCGCC
CAGGAGGCAA CAGAGTTTTT GGTTAAGCCT GAGATCTGCC CATCTGAAGC GGGCGCAGTA
CCGAAAGATA AAGTTTGA
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| Protein sequence | MTQAKFVEGP ILRHILVMSS TAAVGISALF LVDLLDIFFL SLLGEAELAA AVGYAGTISF
FTTSIGIGLS IALGAQVSRA IGAREIDNAK RLLMSSLLVT LAVSSLVSLL VSLNIPALLT
LVGATGQTAE LAADYLYILV PSLPFICLAM ALGAALRAVG DAKLSMVSTL VGGGVNLVLD
PILIFVLAMG IEGAAVASVL ARLSVMLVAG RGVFVKHGLG SKPTRDAFVG DLKPIFAIAG
PAMITNVATP IGNGFMTRAI AEFGDAYVAG WAVLGRLTPV AFGMIFALSG AIGPIVGQNF
GARRYDRLRD CLTQSLLFCT VYVVGMALVL FLAQDLIVSA FDLKGDSAEF IGFFLTYIAV
FFVFSGALFV ANASFNNLGK AKYSTVFNVG KATLGTLPFI WLGAQYGGVY GVLIGQVLGS
VLFGVAGVYT AYRLVASFES DRNATKEAAD EEVVPASSNP LSSSFVQMAT HTEEKDCIGA
QEATEFLVKP EICPSEAGAV PKDKV
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