| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2026 |
|---|
| Symbol | |
|---|
| ID | 4604276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2462458 |
|---|
| End bp | 2465664 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639781403 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_927901 |
|---|
| Protein GI | 119775161 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00076043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.701552 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGGA CAAACAGGTT GGCGAAAGCC GTGCGCACTT CGATTATCTT TGGTGCCGCA
GCCGTAGCTT ACAATGCTTA TGCAGCAGAA GAACCGAAGT TGAACAGTGA TGCCGCTGTA
GAAGCTTCAT TGGAAGAAGA AGAAGTTCAA GAGCGTGTGG TGGTTACAGG CTCTCGTATC
CGTAAAGCCG AATTCTCTGA AGCATCACCT ATTCAGGTGA TCAGTGGTGA CATTTCGCGC
GAACTGGGTT TGTTTGACGC AGGTCAGATG CTGCAGACGA CAAACCAGGC CTCAGGTATC
CAAATCGATA ATACCTTTGG TGGTTATGTT CTGGACAACG GTCCAGGGGC TGCAACCATC
GGTTTCCGTG GTTTGGGAGC TGAGCGTACT CTGGTTTTGG TAAATGGTCG TCGTATGGCA
CCCGCTGGTG TAGGCGGTGC GCCGACTTCA CCTGACCTGA ACTTGATCCC AGGTGTAATG
ATCCAGCGAG TAGAAAACCT GTTTGACGGT GCTTCAACCG TTTATGGTTC TGATGCTGTT
GCCGGTGTTG CCAACGTAAT TTTGAAAAAA GACGTTGAGG GTTTTGAGTT TAACGCTGCC
TACTCACAGC CAAAAGGCGA GGGCGGTGAG GAAACTCAAC TTTCTGGTAT GTGGGGTACA
ACCATGGATA ATGGTTTTAT CTCCGTCGGT GTTGAGTATA ACAAGCAAGA ATCCCAATCA
TTTGGTGGTA ACGATTTTAC CAAGGGTTGT GAAGAACGAT TCTTCTACAC TGAAGATGGA
CGTGTGATCA ATCGCTACAG CGGTATTGGT CCGACACAGA ATGGTGAAGA TACATGTAAT
ATTTTCCCAT TGACCAACCG TATCACTACC CAGTATTTCT GGGGAAGCCT TTACCATACT
CCCGGTTACT CAAATACAGG TATTCCTAAC TTCAGTGAAA GCACTATTCC AAATCAATAC
ATAGGATTAC TGCCTTCTTG GATTGCTGCT GACTCCAACG GCGATGGTAT CAACGATGTG
GGTATTGTTG ATGGCAACGG TGATGGTTTC CTGGATTTTG ATTTCCAGGA TCCAATGTAT
GCCTATCAGC AGTCTGAATA CTACAAGAGC GGCGACTATA AGAGTGGTCA GGAACGTGTA
TCTGCCATGG TTAACGGCGA GTACAACTTC CAGGATAGCT CTGATTCGAC CTTTTATTAC
GAAGGTTTGT ATGCCAAACG TGAAACCGAC ATTTTCAATC CAGGTGCTCA GATCTTTGAA
TGGGTGCCTG CATCTAACCC ATTCAACCCT TGTGGCGTGA ATGGAATAGA CTGTTTGGCT
ATGTTGGGTG CACCTGTTGG ACCTCAGCGA GTTCGTCCTA TTATTAACAT TCGTGGTGAC
CGTGACCTGA CGAAAGTAGA AGTTGAACAG TATCGCGTGG TTGCCGGTGT AACAGGAAAC
TTGCCGGTAT TTGAGGCAAT TGGCCTCGAC AATTGGTACT ACGATTTCTA CGTTTCTCAC
AGTGCCTCTA AGGGTACTGA CAAACGTGTT GGTATCAATG AAGAGCGTTT GCTGAACTCG
CTGTACACCT CGGTGATGGA TGCAGACGGT AATGTGACCT GTGGTGATGG TAGCGACGGT
TGCGTACCAG TTAATCTCTT TGCGTCAAAC ATTTTCCAAG CCGGTGGCGG TACTTTGACC
GAAGCAGAAG CAAACTATCT GTTCATGGAC CGTACCATGG AGACTAAGGT TGACCAGACT
GTCATCAGTG GTTTCGTTGG TGGTGATCTG TTCAACTTGC CTTGGAACAA CGAGCCAGTA
AGTACCGTAT TCGGTATGGA ATGGCGTGAA GATTCTATTG AGTCTAACCC AAATGCCGCA
GCGGCTGATG GTTTGTTGTG GGGTTACTTT GCTGACCAAG GTGCTGACGG TTCCCGTCGT
CTGAAAGAAG CTTTTGCCGA ATTGGACTTC CCATTGGTGC GTGGTATGCC TGGCGTTGAA
GAGCTGACAC TTACCGCATC TGGCCGCATC TCAGACGAAA GTTTTTACGA CGCAGCAACA
ACATATAGCC TGAAAGCTGT ATACCGACCT GTAGAGTGGG TAACTGTTCG TGGCACGCAA
GGCACCTCTT ATCGTGCTCC AAACTTACGT GAACGTTTCC TCAATGGTAC ATCAGGTTTT
AATACGGTAA GCGATCCTTG TGTGGTTCCG GTTGATGCAC GTATTTCAGA CCCTCTGAAC
CCTAATGCAC CTATCTCCTA CGATCCAACA AATGACGATC GAGATGCATC TGTTCTGCAG
GCTTGTCGTA ATGCAGGTGT TGATCCAACT GCATTGGGCC TTGGTGGTGA TGGTTCTGCA
CCGTACACTT CCAATTACAG TGCAGAAGTT GTCACTGGTG GTTCAACAGG CTTGGCAGAA
GAAACCTCTA CAGCCAAAAC TTATGGCTTG ATCGTTGAAC AGCCATTCTC AGATGATTTC
AATTTGACAC TGTCTGCTAC GCGTTTTGAT ATCGAGGTAA CCAACAGTAT TGCTGAACCT
TCATCCGCGT ACAGTATCAA TCAATGTTAC AGTGCTGATG GTAACGAAGC TTTCTGTAGC
CGTATTGACC GAGGCTCCAA CGGTCAGATC GATTTGGTCG ATGCCAGCTT CATCAACATT
GGTTTGTTGA CCTCAAAAGG TTGGGATTAC AACCTGTTCT ATAGCCAAGA GTTTGTGGTT
ATGGAAAACA GCTTCGACGT GTCTCTGGAT ATTCAGGCGA CGCAAATGAC CGAATCTCTG
TACGATGTAT TGGGGACAGT GGACGACAAT CTGGGTGAGC CGGACGTGCC TGAGTGGCGT
GCCAGTGCAC TGCTGCGCTT GGAATACCAA GACTTCAGCT TTAACTGGCA AACTCGTTTC
ATCGGTTCTG GTGTAGAAGA CTACGATCCA GAGACTGATG GTGACAAGTT TGTTGAAGAC
ACTGTAGCCT GTACCGGTAT GACCAATGCT GATGGTAGCC CATTGCTTTG TCGTCCTGTT
GACTACACAG AAGACTATTG GGTTCACAAC TTGTCTCTGG CCTACACCAT GGACAACTAC
GAGTTCAGTG TAGGTGTACG CAACGTGTTC AACGATGCTC CGCCAAAAGT TGACCCAGAC
GGCTCGTTCT CCAACACCAA CATCCCACTG GGTGTAGGTT ATGCTCAGCC ACGCACCGTG
TTTGTTAACT TTGGTGCTAA GTTCTGA
|
|---|
| Protein sequence | MFRTNRLAKA VRTSIIFGAA AVAYNAYAAE EPKLNSDAAV EASLEEEEVQ ERVVVTGSRI
RKAEFSEASP IQVISGDISR ELGLFDAGQM LQTTNQASGI QIDNTFGGYV LDNGPGAATI
GFRGLGAERT LVLVNGRRMA PAGVGGAPTS PDLNLIPGVM IQRVENLFDG ASTVYGSDAV
AGVANVILKK DVEGFEFNAA YSQPKGEGGE ETQLSGMWGT TMDNGFISVG VEYNKQESQS
FGGNDFTKGC EERFFYTEDG RVINRYSGIG PTQNGEDTCN IFPLTNRITT QYFWGSLYHT
PGYSNTGIPN FSESTIPNQY IGLLPSWIAA DSNGDGINDV GIVDGNGDGF LDFDFQDPMY
AYQQSEYYKS GDYKSGQERV SAMVNGEYNF QDSSDSTFYY EGLYAKRETD IFNPGAQIFE
WVPASNPFNP CGVNGIDCLA MLGAPVGPQR VRPIINIRGD RDLTKVEVEQ YRVVAGVTGN
LPVFEAIGLD NWYYDFYVSH SASKGTDKRV GINEERLLNS LYTSVMDADG NVTCGDGSDG
CVPVNLFASN IFQAGGGTLT EAEANYLFMD RTMETKVDQT VISGFVGGDL FNLPWNNEPV
STVFGMEWRE DSIESNPNAA AADGLLWGYF ADQGADGSRR LKEAFAELDF PLVRGMPGVE
ELTLTASGRI SDESFYDAAT TYSLKAVYRP VEWVTVRGTQ GTSYRAPNLR ERFLNGTSGF
NTVSDPCVVP VDARISDPLN PNAPISYDPT NDDRDASVLQ ACRNAGVDPT ALGLGGDGSA
PYTSNYSAEV VTGGSTGLAE ETSTAKTYGL IVEQPFSDDF NLTLSATRFD IEVTNSIAEP
SSAYSINQCY SADGNEAFCS RIDRGSNGQI DLVDASFINI GLLTSKGWDY NLFYSQEFVV
MENSFDVSLD IQATQMTESL YDVLGTVDDN LGEPDVPEWR ASALLRLEYQ DFSFNWQTRF
IGSGVEDYDP ETDGDKFVED TVACTGMTNA DGSPLLCRPV DYTEDYWVHN LSLAYTMDNY
EFSVGVRNVF NDAPPKVDPD GSFSNTNIPL GVGYAQPRTV FVNFGAKF
|
|---|
| |