| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2001 |
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| Symbol | |
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| ID | 4604251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2430742 |
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| End bp | 2431785 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781378 |
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| Product | GGDEF family protein |
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| Protein accession | YP_927876 |
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| Protein GI | 119775136 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0435343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.378089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGAAA AGCCACCAGC CACCGCTGAT CTCTTACAAA CAGCTGCCGG GCGGTTGAAA
AAAGCCGTTC CTTTGATGCT TAAACATCAA ATCCCCACCA CTCCGATAAA CTATGCCCTC
TGGTACACCT ATGTGGGCGA GCAACAACCC GAGCTCAACA AAGCCCTGGA CGACCTGGTG
GCCCAGTACC ACACACTGCC ACCAGTCAGC GGCGAGCTCT TGTATCGCGA ACATCTGGCC
GATCCGGTTG AGCTTGATGT GCGGGATATG CGCCAGAATC TCGAGGCCAT GGCCACCGAG
CTTGGCAACC AGCTGAAAGA CACCAACCTG GATGCCACCG CATTTCAGCA AAAAATCGAC
GCTAACTTTT CACGATTGGA ACGCATAGAC AACGAGAGCC TGAGTCTTGA ACAGGTGCTG
AATCTGGTGC GTACCCTAGT TAAAGAATCC GACGCCATCC GCGAGTCCAC CAGCTACTTC
ACCGGCCAGC TCGCCAAGGC GCAGCAGGAA ATCGATACAC TCAAACGCCG GCTGGCCGAA
AGTGAAAAAG ATGTGTTTTT CGATGCACTC ACGGGCTGTC TCAATCGCCG TGCCTTTGAT
GCCGACCTTG CTGGTCTGCT GGCACTGGCA CCTGAGGGTT GTTGCCTTAT CCTGTGTGAT
ATCGACCATT TCAAGCACTT TAACGATAAC TATGGCCACC AACTTGGCGA TCAGGTACTG
AAGCTGGTGG GCAAACGCCT AACCGAAGCC TGCCGGGACG GCGTGAAGTG CTACCGTTAC
GGCGGTGAGG AGTTTGCCCT GCTGGTCCCA TCAAGCAATC TGCGCATCGC GCGCCAGTTG
GCGGAAGGCA TTCGCCGCGG CGTAGAAAAG CTGACCCTCA AGGACAGACG CAGGGATGCC
CGTATCGACA ACATCAGCGC GTCGTTCGGT GTGGCCCAGT GGCAACCCAA AATGACCGCA
AGAAACCTGA TTGAGCACTC CGACAAGCAG CTTTACGAAG CCAAACGCCT TGGACGCAAC
AGAGTCATGC CTATCTCAGG CTGA
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| Protein sequence | MGEKPPATAD LLQTAAGRLK KAVPLMLKHQ IPTTPINYAL WYTYVGEQQP ELNKALDDLV
AQYHTLPPVS GELLYREHLA DPVELDVRDM RQNLEAMATE LGNQLKDTNL DATAFQQKID
ANFSRLERID NESLSLEQVL NLVRTLVKES DAIRESTSYF TGQLAKAQQE IDTLKRRLAE
SEKDVFFDAL TGCLNRRAFD ADLAGLLALA PEGCCLILCD IDHFKHFNDN YGHQLGDQVL
KLVGKRLTEA CRDGVKCYRY GGEEFALLVP SSNLRIARQL AEGIRRGVEK LTLKDRRRDA
RIDNISASFG VAQWQPKMTA RNLIEHSDKQ LYEAKRLGRN RVMPISG
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