| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1997 |
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| Symbol | |
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| ID | 4604247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2427012 |
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| End bp | 2427884 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781374 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_927872 |
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| Protein GI | 119775132 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000823864 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.228125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACAG ATCTGCTGAA AACCTTTTTG GAAGTTTCAC GTACCCGCCA TTTCGGAAAA
GCTGCCGAAA ATCTTTATCT TACCCGAAGC GCAGTCAGTT TTCGGGTGAA GCAGCTTGAA
ACGATACTCG GGGTGGAGCT GTTTGAGCGC CAACGGAACA ATATTCAGCC AACACCGGCT
GGCGAGCGCA TGCTGAATCA TGCCGAGGCT GTGCTGACGG CTTGGGAGCG TGCGAAGCAG
GACGTGTCAT TAAGTCGATT ACAATCGACA CAATTGACCA TAGGTGCTGG CCCCAATATC
TGGGATGCGT TTTTACAGGG CAACCTGCAA TCCTTGCACA AGGGCTTGCC GGGCGTGGCG
TTACGCACCG AGGTGTTGCC CCAGAACGTG ATGACCCGTC AGTTGATGGA GCGCACCCTG
GACATGGCGA TTTCCTTCGA CCCGCCCAAA ATGGAGGATT TTGAACAGAT CCGTATCGGC
GTGGTGCAGT TGTGGCTGGT GTCCAGTATC GGACCACTCA GTTTGTCAGA GTGTCTTAAA
CACCATTACA TAAAGGTTGA CTGGGGTACT GCCTTTAATA TCCTTCACGC ACAGGAATTT
GGCGATATGC CATTGCCGGT GTTGCACACC AGTTCATCGC GTATAGCCCT GGATTTTGTG
CTCAATAACG GCGGCAGTGC GTTTTTGCCG GATCACATGG TGAGCCCGTA TCTCGAGCGG
GGCGAGTTAT GCCGGGTGGA AGGTGCACGC TCCATCCCCC GTAACGTGTA TGTCGTGTAT
TGGTCGCAAA ATGACAGACT ATCGCAAATA GAGCGGGCGG TGAGTTTTCT GGCGCGGGAG
TCTGATGAAG GCGCTGAAGA GCTCAGCGCC TGA
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| Protein sequence | MDTDLLKTFL EVSRTRHFGK AAENLYLTRS AVSFRVKQLE TILGVELFER QRNNIQPTPA
GERMLNHAEA VLTAWERAKQ DVSLSRLQST QLTIGAGPNI WDAFLQGNLQ SLHKGLPGVA
LRTEVLPQNV MTRQLMERTL DMAISFDPPK MEDFEQIRIG VVQLWLVSSI GPLSLSECLK
HHYIKVDWGT AFNILHAQEF GDMPLPVLHT SSSRIALDFV LNNGGSAFLP DHMVSPYLER
GELCRVEGAR SIPRNVYVVY WSQNDRLSQI ERAVSFLARE SDEGAEELSA
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