Gene Sama_1885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1885 
Symbol 
ID4604135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2300052 
End bp2301539 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content53% 
IMG OID639781262 
ProductSlt family transglycosylase 
Protein accessionYP_927760 
Protein GI119775020 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000159239 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAACA TTAATTACTT TTTTGCCGGC AGCTTACTGC TGCTTTCCGG CTGTCAGTTG 
ATCCCTAATG GGGACATCCC AGCTGATGAT GAGACCAATA TCAATCCGAC GTTAGAAGTT
GTCTCCCCCA CCGAATCTGA CACCCGGGAG CAGGTCGTTG AAGCACGGGA TCTGTGGCAA
CGTATGCAGG AAGGTATGCA CTGGGAAAAG CCCAACGAAG CCTACGTCGC ACCTTTCCGT
CAGAAGTTGC TGGCCAATCC AAGGCACCTT GAGCAAGTGT TCAGCCGTGC CGAGCCATTC
CTGTATCTGA TAGTCGATGA ACTCGAACGA CGGGGATTGC CCCTGGAACT GGCGCTGTTA
CCCGCCATCG AAAGTGCTTT TGATGCAGAC GCTATTTCCC ATGCCAGTGC ATCCGGCTTA
TGGCAGTTAA CGCCGCCCAT GGCCCGTTAT TTCGGACTGA AGATGAACTG GTGGTATGAC
GGCCGCAACG ACGTGGTAGC GTCCACCCGA GCAGCGGCGG ATTTCCTGGA ATACCTGTAC
GATCGCACCG GCAACAACTG GCACTATGCA ATTGCAGCCT ATAACAGCGG CGAAGGCCGG
GTATTGAGTG CCGTACGTCA TAATGAAAAA GCGGGCAAGC CGACTGATAT CTGGGCGTTA
AAGCTACCTC GGGAAACCCG AAATTATGTG CCAAATCTAT TGGCGCTGGC CGATGTTGTC
AAACACGCAG ATAAATACGG CGTCTCCTTA CCTCGCATCA AAAACGAACC TGTAGTCGAT
GTCGTAGAGA TAGGCAGCCA GATAGAACTT GCATTGGCAG CAGAGCTCGC GGGGTTGAGT
GTCAGTGAAC TTAAGTCACT GAATCCCGGA TTCAAACAGT GGGCAACCGC CCCCAAAGGT
CCTCACCGCT TGGTGGTACC TGTCAGCAAC GCGCCTGATT TTGTCGTGGC ACTGGCGCAA
ACCCCGCAAG AGCAGCGGGT ACAGTGGGCC AGATACCAGA TTAAGCGTGG TGACAGTCTT
AGCGTCATTG CCCGCCAATT CGGCACCACA CCTCAGGTGC TCAAGCAGGT GAATCAGATG
AAGAACAATC AGCTGATTGC CGGCAAAGAA TTGGTAGTGC CAGCCAATGG CCGCACAAAT
GCAAGTGCGC AGCTGGCATC GGCAACGCCA AAACAAAGCT ACAAAGTAAA ATCCGGTGAT
AGTCTGTGGA AAATCGCCCA GGCCCACGGT ATCAGTGTGA ATGACCTGAA AAAATGGAAT
TCCCTGGGTA GCAAAGCAAT CATCCGTCAG GGGCAGCTCC TGACAGTTTG GCCAGGCTCT
AAAGCCGTCG CCAACACGCG CTCGACCACC TATCAAGTCA AACGCGGCGA CTCTCTGTCG
CTGATTGCGC AGAAATTTAA GGTCAAGATC TCTGAGCTGA TGAGCTGGAA CAAACTCTCC
AGCAGTGCCC TGCAGCCCGG ACAGACCCTG ACCGTCATGC TGCAGTAA
 
Protein sequence
MRNINYFFAG SLLLLSGCQL IPNGDIPADD ETNINPTLEV VSPTESDTRE QVVEARDLWQ 
RMQEGMHWEK PNEAYVAPFR QKLLANPRHL EQVFSRAEPF LYLIVDELER RGLPLELALL
PAIESAFDAD AISHASASGL WQLTPPMARY FGLKMNWWYD GRNDVVASTR AAADFLEYLY
DRTGNNWHYA IAAYNSGEGR VLSAVRHNEK AGKPTDIWAL KLPRETRNYV PNLLALADVV
KHADKYGVSL PRIKNEPVVD VVEIGSQIEL ALAAELAGLS VSELKSLNPG FKQWATAPKG
PHRLVVPVSN APDFVVALAQ TPQEQRVQWA RYQIKRGDSL SVIARQFGTT PQVLKQVNQM
KNNQLIAGKE LVVPANGRTN ASAQLASATP KQSYKVKSGD SLWKIAQAHG ISVNDLKKWN
SLGSKAIIRQ GQLLTVWPGS KAVANTRSTT YQVKRGDSLS LIAQKFKVKI SELMSWNKLS
SSALQPGQTL TVMLQ