| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1872 |
|---|
| Symbol | |
|---|
| ID | 4604122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2283634 |
|---|
| End bp | 2286774 |
|---|
| Gene Length | 3141 bp |
|---|
| Protein Length | 1046 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639781248 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_927747 |
|---|
| Protein GI | 119775007 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCGG TAATAAGAAC TATCATTTAT CTAATGCTTT TGCACTTTGG TAACGCCTGG
TCCGCACCTG AAAAAATTGC ACAAAACGTA GACTTTGACT CAGACAACAT TTCCGCAATC
CTGATTGATA AACAAGGTTT TATGTGGCTT GGAACCCAAG ATGGGTTGTT CTTTTACGAT
AGCTATCAAC TGGAGAAATT CAGGCCGGAT GCTGATACGC CGGGCACCAT CGCAGCTTTG
GATATACGCA ATCTCTATCT GAGTCGGGAC AACAGTCTCT GGATATCCAC TAACAGCGGT
GGCCTCAGTC GATTCAACCC GGACACCCGC ACTTTCACTA ATTACCGCCA CAATTCCGAA
GATATTAATT CCCTGTCCAA TGACAGTGTT TATGACGTCG CTGACGGCCC TGACGGTGAG
CTTTGGGTAG CGACTCAGAT TGGATTAAAC CGATTAAATC CGGCAACCGG ACAAGTGCGC
CGGTACCTTA AAGACGACAC AAACGCCGCG TCCCTGCCCT CAAACTATGT TTACACGCTT
TTTGTCGACA GCAGCAACCG GCTTTGGATT GGAACCATTG GCGGTGGACT GGCGTATTGG
GCAGGTGAAA CCCAAGGATT CATCAGTTTA GAACTGCCCA ATGTGATAAC GGATGTATTT
TCCATCGTCG AACAGGATGG AAAATATTTG TGGGTCGGCA CCCGCCAGGG GTTGCTCAGG
ATAACGCTGG ACAACCTACT CGTCAGACGT ATCCAGCCAG ATCAGGGCAA TGAGCCGGAA
TTGATGATTA TTTCATTACA TCTGGACGCC AATCAGCTGG TTTTAGGTAC CTTTGGCCAA
GGCCTCAAGT TTTACAACAC TGATACCAAT CAGCTCAGTC ATGCTAGCCA GGATATCCCA
GGCGCCAAAG ACACCATTAC CAGCATGGTA AAAGACAGCA CCGGGCAGCT TTTTTATGCC
ACCTGGGGAC GAGGAGCCTA TAAGCTGGAT GTGACCGAGC GAAATAAATC GGATGACGGT
ACAGCCAAGC GCACGTCACT CTCTTTGCCT AATGTCGCAG CGATGTACGC AAAATCCGGC
AGTAATAAAG CCTGGGTTGG CTCTTTCAGT GATGGCCTGC ACTGGCTTGA TCTCGACACC
CAACGACTGA ATAGATTCAC CCCCAGTACA TCAGCCAATA ACATTAATGG CGTGCTGAGC
ATTGCTTCCT TTGGAGCGGA CGAGCTACTG GTTGGAACAT CGGAAGGCTT ATGGCATCTG
ATTGGCAATG GCACGGTGAA AGCGCATTTT TCTCACCAGC CTGAAGAGAC GGGCTCAATT
GGCAAGGGCT TTGTTAGAGT GCTGCAACCC GATGACAGTG GCGATGTCTG GGTCGGCATC
GGAGGTGATG GCCTATACAA ATACCATCCC GACAGCGGAA CATTCAGTTC ATATACGCAC
GACCCTTCAG TACCGGATTC CCTGAGTGGA AATTACATCA CCTCACTTCT GATAGATGGT
CCTTACCTTT GGGTGGGCAC CCGCTCAAAT GGCTTGAATC TCTGCCAGAA AGACAGCATG
TCCTGTCAGC GTCTTCAGGT ACATAACAGT GGGTTAAACC ACTTTTACAT CTCCGATATC
GCAAAGGACG ACCTGGGTAA TATTTGGGTT GGTACCGATG GCGGCGGTTT ACACAAGGCT
GAATTCCACC GGACTGGTGT CAAGACAGAA GTTCGTATCA CGCCAGAGCC GGGATTGGCT
GCAGACTCGA TTAAATCCAT TTTACCGGGA GCATCAGGCG AAGTTTGGTT TACAACAAGT
GATGGACTAT TCAGCTATCA CTCAAACCAA AAGCGCTTTC ACAAGGCAAC AGACAGGGTA
CTGAACGGCC TGGGTGGATT TTCGCAACGT TCTCGAGCAA GCACTGGCGA GTTCAACCTG
CTTGGCACCA ATAATGGTGT GTATCTCTTT TCGTCGATAT CCAACGTCGA GCCCGAGACC
CAATTCCCTG TCCGATTCAC TCAGATTGTA TCTGATAGCC TGGCAAACCC AATTTTAAAC
ACTGCAATTC AAGACCCTTT CCAAATGTCG GTCCCCTGGG GTGGCTGGCT GAATGTGGAG
TTTGCCCTGC TGGACTTTGG CTCATCGGCT CATAGCTATC AATATCGCAT GTCTTCTGAG
AGCCAATGGA TATCGCTGAA TAACATGCAC CATTTGAATT TCTATAAGCT CGATCCAGGT
GTACACCGTC TTGAAGTGCG GGGAAGAGGC ATAAACCAGG CATGGAGCCA ACCGGCAACA
CTGCACCTCA CAGTGATCCC CCCCTGGTGG CGAAATACCA CCTACATCGG CTTATTACTG
GTGTGCATCG CATTAGTGGC GGTGAGTTAT CACAGGTTTC GGATGGCAAG ATGGGAAAGA
TATACCCGTC ATCTCAATGC GCTGAAAGAA GAGAAGCTCG CTGTGATTGA AAAGCTCAGG
CAAAACGAAC AACATCTGAA ATCCGCGTTT GAAGGAATGC GTAATCTGGC CACCCGCCTG
CAATATGCCA AGGAAGAAGA GCGTAAATCC ATTTCCCGGG AACTTCATGA TCAATTCGGT
CAATCACTCA CTGCCACTCA GATAAGCCTG CAACTGTTCC GGCGCCAACA CCCCGGTGAC
CCGAAACTGA TAGATACCTG TATTACGACT ATCCAGGCCA TGATTAAGCA GGTACGCGCA
ATCTCGTTCG ATTTACGTCC CAGTCTTCTG GACGACGTTG GTTTGGTTGC AGGTCTTCAC
CACCAGCTCA ATAAGATGTC ATCGTCATTG ACGCACCCCA TTATCTTTAA TGCAGACACA
GATATACCTG AACTTAGCCC CGAGCTGACC ATTACTCTAT TCAGGGTAAT TCAGGAGTCA
GTCACCAATG CCATTCGCCA TGCAAATGCC ACGCGAATTG AAGTAAAGCT TTACCCAGAC
GGTGACAAGA TCAAGGCCGA GGTTTCTGAT AACGGCGTTG GCTTCGAACC CGGTGGCATT
TCCGCTAAAG TCAGCAAAGG TGGCCATTTG GGCCTATTGG GTATTGAGGA GCGGGTAAAG
TCCCAAAACG GTAATTTGAA TATCAAAGCC ATTCCCCATG GCGGAGTCTC CATTTCAGTT
GAGTTTCCTT ATGAAAAGTA A
|
|---|
| Protein sequence | MSAVIRTIIY LMLLHFGNAW SAPEKIAQNV DFDSDNISAI LIDKQGFMWL GTQDGLFFYD
SYQLEKFRPD ADTPGTIAAL DIRNLYLSRD NSLWISTNSG GLSRFNPDTR TFTNYRHNSE
DINSLSNDSV YDVADGPDGE LWVATQIGLN RLNPATGQVR RYLKDDTNAA SLPSNYVYTL
FVDSSNRLWI GTIGGGLAYW AGETQGFISL ELPNVITDVF SIVEQDGKYL WVGTRQGLLR
ITLDNLLVRR IQPDQGNEPE LMIISLHLDA NQLVLGTFGQ GLKFYNTDTN QLSHASQDIP
GAKDTITSMV KDSTGQLFYA TWGRGAYKLD VTERNKSDDG TAKRTSLSLP NVAAMYAKSG
SNKAWVGSFS DGLHWLDLDT QRLNRFTPST SANNINGVLS IASFGADELL VGTSEGLWHL
IGNGTVKAHF SHQPEETGSI GKGFVRVLQP DDSGDVWVGI GGDGLYKYHP DSGTFSSYTH
DPSVPDSLSG NYITSLLIDG PYLWVGTRSN GLNLCQKDSM SCQRLQVHNS GLNHFYISDI
AKDDLGNIWV GTDGGGLHKA EFHRTGVKTE VRITPEPGLA ADSIKSILPG ASGEVWFTTS
DGLFSYHSNQ KRFHKATDRV LNGLGGFSQR SRASTGEFNL LGTNNGVYLF SSISNVEPET
QFPVRFTQIV SDSLANPILN TAIQDPFQMS VPWGGWLNVE FALLDFGSSA HSYQYRMSSE
SQWISLNNMH HLNFYKLDPG VHRLEVRGRG INQAWSQPAT LHLTVIPPWW RNTTYIGLLL
VCIALVAVSY HRFRMARWER YTRHLNALKE EKLAVIEKLR QNEQHLKSAF EGMRNLATRL
QYAKEEERKS ISRELHDQFG QSLTATQISL QLFRRQHPGD PKLIDTCITT IQAMIKQVRA
ISFDLRPSLL DDVGLVAGLH HQLNKMSSSL THPIIFNADT DIPELSPELT ITLFRVIQES
VTNAIRHANA TRIEVKLYPD GDKIKAEVSD NGVGFEPGGI SAKVSKGGHL GLLGIEERVK
SQNGNLNIKA IPHGGVSISV EFPYEK
|
|---|
| |