| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1759 |
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| Symbol | |
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| ID | 4604009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2151993 |
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| End bp | 2153060 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781123 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_927634 |
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| Protein GI | 119774894 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.538539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0215764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCAACG AGCCACGGGC AGTTAAGGAT GAAGTATTTG CCATGACACT CGCAGCTCAC
AAACCCAAAG AAAAAGATGA GTCGGCCGGG ATATTGAGAA AGGCCGTACC CCAAATGTCG
GCACTCGGCA TTCCCGTAAC ACCCGACAAT TATGCCGTTT GGTATGCCTA CTATCAGGGG
GCCGATTTGG CGCTTGTCAG GGCTATCAAT GGTTTGATGG AAAATCAGGT CTCTTTTTCT
GCGGAGGTGT GCCGGGGACT CTACAGCAGT TTTATCCAGA ATAATGCACC CGAAGTATTG
GAAAACGTGC ACCTGGAAAC CCAGTTGCTG ATCAATGGGC TACTCAGCAA AATCAGTCTG
TTGACCTCAG GTTCTGAGAC ATTTCAGCTC GCCATAGAAA GTTTTGGCCA GCAATTGCGG
CTTCCTCAGG AAGCGGAATC GCTGCATCGA TTGGTGGAGG GCGTGTTGGT TGAGGTGGAC
AAGGTGGTAA GTGAGAACGC GGATATCCAC TCAAGTCTCA AGTCGATGGA TCAGGAACTC
AATCATCTAC GAGCTGAAAT AACCGAGTTG TCGGTGATAT CCCTTACCGA TAAATTAACC
GGGCTGAATA ATCGCCGTGC ATTTGAATCT CGTTTGGCGC AGGAGTTTTT ACCATCAACG
CCAAAATGTT CGCTGTTGGT TATCGATATT GATCACTTTA AGCAGTTTAA CGATACATGG
GGCCACAATG CCGGAGACAA GGTGTTGGTG TATGTGGCGC AGAATCTGAA ACAGGCCGTA
AAGGGCGAGG ATTTGGTTGC CCGCTACGGA GGCGAAGAAT TTGTCATTGT GTTGAAGGAT
ACCAGCGCTG AGGATGCAGC CAACATTGCG GAAAAGCTGC GCGACCGTAT CGCCAACAAA
AAATTGACCT TGAAGAAAGA CAATTTGGAT TTGGGTAAGG TATCCGTATC CATCGGCGTC
GCCAAGGCCT ATGCCAATGA AACCCCTGAA CAGTTTTTTG AGAGGGCGGA CGGCGCGCTT
TACCGCGCCA AAGGCACTGG CCGGAACCGG GTTTGCCTCG CTGACTAG
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| Protein sequence | MVNEPRAVKD EVFAMTLAAH KPKEKDESAG ILRKAVPQMS ALGIPVTPDN YAVWYAYYQG
ADLALVRAIN GLMENQVSFS AEVCRGLYSS FIQNNAPEVL ENVHLETQLL INGLLSKISL
LTSGSETFQL AIESFGQQLR LPQEAESLHR LVEGVLVEVD KVVSENADIH SSLKSMDQEL
NHLRAEITEL SVISLTDKLT GLNNRRAFES RLAQEFLPST PKCSLLVIDI DHFKQFNDTW
GHNAGDKVLV YVAQNLKQAV KGEDLVARYG GEEFVIVLKD TSAEDAANIA EKLRDRIANK
KLTLKKDNLD LGKVSVSIGV AKAYANETPE QFFERADGAL YRAKGTGRNR VCLAD
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