| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1741 |
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| Symbol | |
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| ID | 4603991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2130596 |
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| End bp | 2131414 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781104 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_927616 |
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| Protein GI | 119774876 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00532384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00268823 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCGACT TTAACGGGAA AAACATTTTG GTGGTCGGCG GTACCAGTGG CATCAACCTG
GGCATCGCGC GAGCCTTTGC GAAGGCGGGC GGCCGGGTAG CGGTAGCGAG TCGCAGTCAG
GACAAAGTCG ATGCGGCGCT TACTCTCTTG AGTGGAGACA ATCCTAAGGT AACGCCGCTG
GGCGCCAGTT TCGACGTGCG TGATAATGAC GCTGTGCTCT TCGGTATCGC CGCATTGCAT
CATCAGCTAG GCACCATAGA TGTACTTATC AGCGGCGCTG CCGGTAATTT CCCGGCTCCT
GCTGCCGGAA TGAGTGCCAA TGGTTTCAAG TCGGTTGTGG ACATTGACCT CCTTGGCAGT
TTTCAGGTGC TGAAAGCCTG TTACCCTTTG TTGTCACGCC CAGGTGTCAT TCTGCAGATT
TCAGCTCCTC AGGCCTTTGT CCCCATGCCA ATGCAGGCCC ATGTGTGCGC TGCCAAGGCT
GGTGTTGATA TGCTCACCCG AACACTTGCG ATGGAATGGT CCCACGAAGG GATTCGGATT
AACTCGATAG TTCCTGGTCC AATTGAAGGC ACAGAAGGGT TTGACAGACT TGCTCCCGGC
GATGCCCTCA AGGCACGGGT TGCGCAAAGT GTGCCCCTTG GACGAAACGG CAGTATCACA
GATATCGCAA ACTGCGCACT GTTTCTGGCT TCTGAGTTCG CCAGTTACAT CAATGGCGTG
GTTTTACCCG TGGATGGCGG CTGGTCACTT GGTGGAGCCA GCATGGCCAT GACAGAGCTT
GGGCAACTCA TATCAAAGTC GGGCAAGGGC TCAGCTTAA
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| Protein sequence | MFDFNGKNIL VVGGTSGINL GIARAFAKAG GRVAVASRSQ DKVDAALTLL SGDNPKVTPL
GASFDVRDND AVLFGIAALH HQLGTIDVLI SGAAGNFPAP AAGMSANGFK SVVDIDLLGS
FQVLKACYPL LSRPGVILQI SAPQAFVPMP MQAHVCAAKA GVDMLTRTLA MEWSHEGIRI
NSIVPGPIEG TEGFDRLAPG DALKARVAQS VPLGRNGSIT DIANCALFLA SEFASYINGV
VLPVDGGWSL GGASMAMTEL GQLISKSGKG SA
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