| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1633 |
|---|
| Symbol | |
|---|
| ID | 4603885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1999827 |
|---|
| End bp | 2000741 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639780997 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | YP_927510 |
|---|
| Protein GI | 119774770 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02249] integron integrase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.180477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.344337 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTATC AAAGTCCGTT TCTGCAGGGC ATTCGCGAAG AGATGCGGAT GCGTGGTTAC
AGTATCAGTA CAGGAAAGAC CTATCTGTAT TGGATAAAGG CCTTTATCCG CTTTCATCAC
AAAAGGCACC CAGTTGAGAT GGGACAAGCA GAGGTCGCAC AGTTTTTGAC CTTTATCGCC
AATCAACGCA ATGTGGCAAT AAACACCCAA AAGACGGCGT TAAACGCGCT GGTCTACCTT
TATCATAAGC ACTTGCATCA GGAACTTGGC AGCCTTGGTT TTCATTACTC CAGCAAACAG
CGATTCCAGC CTGTGGTACT GACCGCTGAT GAAGTAAAGC GTATCCTGAA TTGTCTGGAA
GGACGTAGCC GTCTGATTGT CGAAATACTT TACGGTAGTG GCTTGCGGAT CTCCGAATGT
CTCAGACTCA GGGTCCAGGA CGTCGATCTG GAACATCTGT CTTTAACAGT GCGGGACGGT
AAAGGCCGTA AAGATCGCAA AACACTGCTC AGCCAACATT GTGCGACGGC ATTGCAATCT
TACATAACCT GCGCCACAGC CCTTCAACAG AAAGATAACC TACAAGGCCT TGGGCCATCG
CTGCCCTATG CACTTGGGCG CAAATATCCC AACGCGTTTA GAAAATCTAT CTGGATGTTT
ATCTTCCCAT CACATGCAAT CTGCCATCAT CCCATTACCG GGGTGTTATG TCGGCATCAT
CTTCATCAGA GTGTTGTGCG TAAAGCACTG GCGGTTGCTG TTGCTAAATC AGGGGTCAAC
AAGCGGGTGA CTTGTCACAC TTTCCGTCAC TCCTTTATAA AATACTTCCC TGTATTTTCA
CCTTTGGGCC AGCGGAGCTG TTCAAATTCA GTCCGGCTGA ATTTGTGCCA CCCATTTACT
TCAGGCCGGT TATGA
|
|---|
| Protein sequence | MAYQSPFLQG IREEMRMRGY SISTGKTYLY WIKAFIRFHH KRHPVEMGQA EVAQFLTFIA
NQRNVAINTQ KTALNALVYL YHKHLHQELG SLGFHYSSKQ RFQPVVLTAD EVKRILNCLE
GRSRLIVEIL YGSGLRISEC LRLRVQDVDL EHLSLTVRDG KGRKDRKTLL SQHCATALQS
YITCATALQQ KDNLQGLGPS LPYALGRKYP NAFRKSIWMF IFPSHAICHH PITGVLCRHH
LHQSVVRKAL AVAVAKSGVN KRVTCHTFRH SFIKYFPVFS PLGQRSCSNS VRLNLCHPFT
SGRL
|
|---|
| |