| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1420 |
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| Symbol | |
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| ID | 4603672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1726807 |
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| End bp | 1730052 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780770 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_927297 |
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| Protein GI | 119774557 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATAA TCACGACTTC CGTTCAACGG CCGGTCACCG TGTGGATGTT TATGCTCGCG
GTGATCCTCT TCGGTATGGT GGGCTTCTCC CGTCTGGCGG TTATGCTGCT GCCGGACTTG
AGCTACCCCA CGGTGACCAT ACGTACCCTG TACGATGGCG CTGCACCCGT TGAAGTAGAG
CAATTGGTAT CCAAGCCTAT CGAAGAGTCA GTGGGTACCG TAAAAGGCCT GCGTAAAATC
AGCTCTGTGT CCCGCTCTGG TATGTCCGAT GTCATCCTCG AATTCGAATG GGGCACAGAC
ATGGACATGG CAAACCTGGA CGTGCGGGAA AAGCTCGACA TCATTGCCCT GCCGCTGGAC
GTGCAAAAGC CATTACTGCT GCGCTTTAAC CCCAACCTCG ACCCCATCAT GCGTGTCGCA
CTGTCGCGGG AGGAAGCCAG TGGCGACGAG CTGAAACAGC TGCGTACCTA CGCCGACGAA
GAACTCAAAC GCCAGCTCGA AGGCTTACCC GGCGTGGCAG CAGTGCGCCT GTCAGGTGGT
CTGGAGCAGG AAGTGCAAAT CCTGCTGAAT CAGGAGCGTC TGTCGCAGCT TGATTTGGAT
GCCGAGCAAA TTCGCAGCCG TATCGCGGCC GAAAACCTCA ACGTCTCTGC CGGTAAAGTG
GTTCAGGGCG ATAAAGAGTA TCTGGTACGC ACCCTTAACC AGTTCAACTC CCTTGAGGAG
CTGGGCCAGG TGGTGGTGTA CCGCAATGGC CAGAGCCTGG TACGTTTGTT TGAAGTGGCC
ACCATCGTCG ATGGCCACAA GGAGCGAAGC GATATCACCC GCATCGGTCA GCGCGAGTCC
ATTGAGCTTG CCATCTATAA AGAAGGTGAT GCCAATACAG TGACCGTGGC GAAAAAGCTT
AAGCAGGATA TCGAACGCAT CAACGGTAAA GATCCCCTCG CCAAGATGGA AATCATCTAT
GACCAGTCCG AGTTCATCGA AAGCGCCGTC AGCGAAGTCA CCTCCTCAGC CTTGATTGGC
TCTATTCTTG CCATGCTGGT GATTTACCTG TTCCTGCGTG ACATTATTCC CACCCTGATT
ATTTCCATCT CTATCCCCTT TTCGGTGATA GCCACTTTTA ACATGATGTA TTTCGCTGAT
ATCAGCCTCA ACATCATGTC GCTCGGTGGT ATTGCACTGG CGGTGGGCCT GTTGGTGGAT
AATGCCATTG TGGTACTGGA AAATATCGAC AGATACAAGC AACAGGGATT ATCGCGGATA
GACGCCGCCA TCAAAGGAAC CCGGGAAGTG AGCGGCGCCA TATTTGCCTC CACCCTGACC
ACACTTGCGG TGTTTGTCCC TCTGGTGTTC GTAGATGGTA TTGCCGGCGC CCTCTTCTCC
GATCAGGCGC TTACCGTGAC CTTTGCCTTG CTCGCCTCCT TGCTGGTTGC CCTGACCTCC
ATTCCCATGC TCGCATCCCG CGAAGGCTTT AAGGCCCTGC CGCCACTGCT GGAGAAAGAG
TCCAGAGCCA AACCTGAAGG AAAAATGGGT AAGCTCAAGC ATTACAGCGC CACAGTGTTC
AGCTTTCCCT TTGTTCTGCT TTTCAAATGG TTACCAGCCG CGTTATTGAC CGCCGCACTG
TCCTTGAGCC GCCTGTTTTC CTGGCTTATG GGCATGCTGC TAAAGCCCTT TACCTGGTTG
TTTAACCTGG GATACCGCGC ACTGGAAGCC AGCTACCGTC CACTGCTTGC CGCTGCACTC
AAGGCCAGAG TCCTTACTCT GGTGGTTGCC CTTGGCATCA CAGCCAGTGC GGGTCTTTTG
CTGCCACGTC TCGGCATGGA GCTTATTCCC AACATGGATC AGGGGGAATT CTATGTGGAA
ATTCTGTTGC CACCCGGCAC CGAAGTTGGT GAAACCGATA GGGTACTTCA GCAGTTGGCC
TTCTCCATCA AAGACATGCC CGCCGTTAAA CACGCCTACA GCCAGGCAGG CAGCGGCGGC
TTGATGACCT CGGATGTCAG CCGTGGCGGT GAAAACTGGG GCCGATTACA GGTGGTACTT
GCCGATCATG ATGCTTTTGA GCAGGTAAGT GATGTGCTGC GCCATGAAAT CCGTCGTATT
CCTGAGCTCG AAGCCAAGGT CAAATATCCC GAACTCTTCA GCTTCCGCAC CCCGCTTGAA
ATCGAGCTGC GCGGCTATGA GCTGGATTTG CTCAAGCAAA GCGCCGACAG TCTGGTTCGC
GCACTGGGCC AGTCAGAGCG ATTCGCCGAC ATCAATACCA GCCTGCGGGA TGGTCAGCCT
GAGCTTGCCA TTCACTTCGA CAGCAACAGG TTGGCGGCGC TGGGCATGGA TGCACCCACA
GTGGCCAACC GTATTGCACA GCGTATCGGT GGTACTGTTG CCAGCAAGTA CAGCCTTCGG
GATCGCAAAA TTGATATCCT GGTGCGCGCC GAAGAAACCG AGCGAGACCA AATCAGCGAT
ATCGGCAACA TGATCATTAA CCCGGACGCG GCGACCCCAA TTCCGCTGTC GGCAGTGGCC
GACGTCAAAC TCGAACTGGG ACCATCTGCC ATCAACCGTA TCAGCCAACA GCGCGTTGCA
CTGGTATCGG CTAACCTCGC CTTTGGGGAT CTGGCTGAGG CGGTCACGGA AGCCCGCAGT
ATTCTTGCCA AACAGCAGCT GCCAGCCTCC ATTCAGGCGA GTTTTGGTGG TCAGAATGAA
GAAATGGAGC ACTCATTCCA GTCGCTGCAA ATCGCGCTGG TTCTGGCGGT GTTCCTCGTC
TATCTGGTGA TGGCGAGTCA GTTTGAGTCT TTCCTGCATC CGCTGCTTAT CCTCTTTGCC
GTGCCCATGG CCGTCAGTGG CAGCGTGTTT GGTCTTTACC TCACAGGAAC ACACGTGTCT
GTGGTGGTGT TTATCGGCCT TATCATGCTG GCCGGGATTG TGGTAAACAA TGCCATTGTA
CTGATTGACC GCATCAATCA GCTGCGCAGT GAAGGCGTTG AAAAACTTGA GGCTATCAGC
GAGGCCGCCA AGTCGCGTTT ACGCCCTATT ATGATGACCA CACTGACCAC GGTACTTGGC
CTGTTGCCCA TGGCCCTTGG TCTGGGTGAT GGCGCAGAGG TGCGCGCCCC AATGGCAATC
ACAGTGATTT TCGGTTTGGC GCTGTCTACC TTACTGACGC TGGTGTTGAT TCCTGTGCTC
TATGCCCTCT TTGACCGCAA AGAGTTTGTC GCCAAGACCC CAGAGACTGC GGAGGCCGGC
GTATGA
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| Protein sequence | MSIITTSVQR PVTVWMFMLA VILFGMVGFS RLAVMLLPDL SYPTVTIRTL YDGAAPVEVE
QLVSKPIEES VGTVKGLRKI SSVSRSGMSD VILEFEWGTD MDMANLDVRE KLDIIALPLD
VQKPLLLRFN PNLDPIMRVA LSREEASGDE LKQLRTYADE ELKRQLEGLP GVAAVRLSGG
LEQEVQILLN QERLSQLDLD AEQIRSRIAA ENLNVSAGKV VQGDKEYLVR TLNQFNSLEE
LGQVVVYRNG QSLVRLFEVA TIVDGHKERS DITRIGQRES IELAIYKEGD ANTVTVAKKL
KQDIERINGK DPLAKMEIIY DQSEFIESAV SEVTSSALIG SILAMLVIYL FLRDIIPTLI
ISISIPFSVI ATFNMMYFAD ISLNIMSLGG IALAVGLLVD NAIVVLENID RYKQQGLSRI
DAAIKGTREV SGAIFASTLT TLAVFVPLVF VDGIAGALFS DQALTVTFAL LASLLVALTS
IPMLASREGF KALPPLLEKE SRAKPEGKMG KLKHYSATVF SFPFVLLFKW LPAALLTAAL
SLSRLFSWLM GMLLKPFTWL FNLGYRALEA SYRPLLAAAL KARVLTLVVA LGITASAGLL
LPRLGMELIP NMDQGEFYVE ILLPPGTEVG ETDRVLQQLA FSIKDMPAVK HAYSQAGSGG
LMTSDVSRGG ENWGRLQVVL ADHDAFEQVS DVLRHEIRRI PELEAKVKYP ELFSFRTPLE
IELRGYELDL LKQSADSLVR ALGQSERFAD INTSLRDGQP ELAIHFDSNR LAALGMDAPT
VANRIAQRIG GTVASKYSLR DRKIDILVRA EETERDQISD IGNMIINPDA ATPIPLSAVA
DVKLELGPSA INRISQQRVA LVSANLAFGD LAEAVTEARS ILAKQQLPAS IQASFGGQNE
EMEHSFQSLQ IALVLAVFLV YLVMASQFES FLHPLLILFA VPMAVSGSVF GLYLTGTHVS
VVVFIGLIML AGIVVNNAIV LIDRINQLRS EGVEKLEAIS EAAKSRLRPI MMTTLTTVLG
LLPMALGLGD GAEVRAPMAI TVIFGLALST LLTLVLIPVL YALFDRKEFV AKTPETAEAG
V
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