| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1419 |
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| Symbol | |
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| ID | 4603671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1723751 |
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| End bp | 1726810 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780769 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_927296 |
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| Protein GI | 119774556 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.446935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCA CCAAACTCGC GGTCCGCCGC CCGGTCACCA CTGTGATGTG TTTTGTCGCC
ATACTGCTGT TTGGTATGGC GTCTACCAGG TTGCTGCCGC TGGAACTCTT TCCCGGCATC
GACATTCCTC AGGTGATGGT TCAGGTTCCT TATAAGGGTT CTACCCCCGC CGAGGTTGAG
CGCGATATTA CCCGGGTACT GGAAGAGTCA CTTGCCACCA TGAGTGGCAT TGAAAAAATG
ACCTCAGAAT CCAGTCAGGA TGGTGCCTTT ATCGAACTGA GTATGAAGTG GGGGGAAAAT
ACCGCCACCA AAAGCCTGGA GGCCCGAGAA AAGGTCGATG CAGTAAGGCA CCTGTTGCCA
AAGGACGTTG AGCGGGTATT CATCCAGCAG TTCTCCACAT CGGACATGCC CATCTTTAAC
CTGCGTATTT CCAGCGATCG GGAGCTCTCT GGCGCCTACG ACTTGCTGGA AAAGCAACTG
CGTCAGCCAC TTGAACGCGT GGAAGGTGTC TCTCAGGTGA CTCTCTACGG GGTGGAGCAA
AAGCAAATCA GCATCAGGGT AGATGCCGAC TTGCTGGCCG CTTCCGGTAT ATCTTCCGCC
GAACTTAACC GCCGTCTACA GGCCGAAAAC TTCGTGATAG CCGGTGGTAC GCTGCGTCAG
GACAAATCCG TCTATCAGGT TTCCCCCAAG GGTGAGTTTC GCTCCCTCAA GGAAATTGAA
GATTTAGTAC TCACACGCGG CGTGCGTCTT GGCGATATCG CCAGGATTAA CTATGAGCTG
CCTGAGCGAA TCGAAGGTCG TCATCTGGAT CAGCGTTATG CCGTGGGCCT GGATGTCTTT
AAAGAGTCAG GTGCCAACCT GGTGGAAGTG TCTGCCCGGG TCATGCGGGT CATTGAAGAG
GTAAAAGCCG ATAAGCAGTT CAGCGGTATT AAGCTCTTTA TCATGGAAGA TCAGGCCGAA
GGGGTAAAAT CCTCCCTGTG GGATCTGATG ATGGCAGGAC TCATAGGTGC GGCCCTGTCC
TTTGCCGTGC TGTATCTGTT TTTACGCAAC ATGGGAATGA CGTTGATTGT GGTGTCTTCG
GTGCCCATTT CAATCTGTAT GACCCTGGCA GCCATGTATC TGCTTGGCTA CAGCCTGAAC
ATACTGTCAA TGATGGGCTT GCTGCTTGCC GTGGGCATGC TCATTGATAA CGCGGTCGTG
GTCACCGAGA GCGTGCTGCA GGAAAAGCAA AAAGAGCTGC ACGAAAGCAA AGATAAAGCC
GTGCTGGCCG GGGTGGATAA GGTTGCACTG GCAGTACTTG CCGGTACCCT GACCACGGCC
ATCGTGTTTT TCCCCAATAT TTTTGGCGCC AAGGTGCAGC TCACCATCTT CCTCGAGCAC
GTAGCCATCG CCATCTGTAT TTCTTTGGGC GCCTCACTGC TGGTTGCCAA GACCCTTATC
CCACTGATGC TGACCCGCAT TCACATCCAT CATGAAGACA AAACCCAGAA ATCCCGGGTG
CAGCGATTCT ATGAAGAGAG CCTGAATTGG GTGCTGACCC ACCCTAAATG GAGTACTTTT
ATCGCGGTGC TGATGCTGGC ATCCACCGCA CTGCCACTTG CGAACGTGAA GCAGGATCAG
GAAGATGGCG CCAATAAGCA ACGACTTTTC ATTAACTATC AGATTGAAGG CCGCCACGCC
CTGGCCGTTA CCGAAGCGGT AGTCGCCGAG ATGGAGAGCT ACCTCTACGC CCACAAAGAG
GAGTTTTTCA TCGACTCGGT TTACAGCTAC TACAATCCCG AGCGCGCCTC TTCGACCGTG
CTGTTTAAAA AAGGCGCTGA GTTTGACCTC GAAGCCCTGA AGAAAAGCAT GCGGGAAGGT
TTTCCCAAGT TCTCCATCGC CAAGCCACAG TTCGGTTGGA GCAATGACCG TCAGGGCGTG
CGCGTCACCC TGACAGGTCG CTCCACCAGC GAGCTTATAC GCTTAAGCGA GGAAGCGCTG
CCTATGCTGA GCGCCATTGA GGGGCTGGAA GATGTTAACT CCGAGGTCAA TGGTGCACAG
CAGGAAGTAC TTATACGGGT TAACAGAGAC ATGGCAGCGC GCCTTGGTAC CCAGGCCAGC
GACATTGCCC GCGCCATCGC TACGGCGCTT CGCGGCCAAA TGCTGAGAAG TTTTCGCCAT
GACCCCAGCG GGGAAATCCG CATTGAACTT GCCTACGAGA AAAGCTGGCA ACAGTCCCTG
GAAAAGCTCA AGCAGTTGCC GGTACTGAAA ATAGACGAGC GGGTATACAG CCTGTCGTCA
CTGGCTGAGG TAGACATTGC GCCGCGCTTT GACACCATAC GCCACTTTAA TCGTAAAACG
GCACTGTCCA TCGGCGCCAA CGTGGAAGGC ATTACCACCG AAGAAGCCCA GGAGAAGATC
AAGCAGGCCA TGAGCCATCT GAACCTCCCC CATGGCTACG AATATTCGCT CCGGGGCGGC
TTCGAGCGTC AGGATGAAGA TCAGCAGATC ATGGTGGTGA ACATGCTGCT GGCGGTGGCA
ATGATTTATA TCGTCATGGC CGCACTGTTT GAATCCTTGC TGCTGCCATC GGCCATCATT
ACCTCCATAC TCTTTTCCAT CACCGGGGTA TTCTGGGCAC TGTGGCTTAC AGGTACGCCC
AATGGCGTGA TGGCTATGAT TGGCATACTC ATTCTGATGG GGATTGTGGT GAACAACGGC
ATAGTGCTGG TTGACCAAAT CAACCAGATG ACCCCCTCAC TGGAAGAACT GTCTGCCACC
ATACATGCAG TGTGCATTAC CCGTCTGCGG CCAGTGTTAA TGACGGTAGG CACCACAGTG
CTGGGTCTTG TGCCCCTGGC CATGGGCGAT ACCCAAATCG GCGGTGGTGG GCCCCCATAC
TACCCTATGG CCATTGCCAT TATTGGTGGA CTCAGCTTCT CCACTGTCAC CAGTTTGTTT
TTGGTTCCCT TGTGTTATCA GGCACTTTAT CGCTTAAGAC ACAGGGCGGC CCAAGGCTTG
TGGATGGCAA ACAAACGTAC AGACAAGTTA CTGCCCTGGC TGGCAGGTAA AGCTGATTGA
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| Protein sequence | MNITKLAVRR PVTTVMCFVA ILLFGMASTR LLPLELFPGI DIPQVMVQVP YKGSTPAEVE
RDITRVLEES LATMSGIEKM TSESSQDGAF IELSMKWGEN TATKSLEARE KVDAVRHLLP
KDVERVFIQQ FSTSDMPIFN LRISSDRELS GAYDLLEKQL RQPLERVEGV SQVTLYGVEQ
KQISIRVDAD LLAASGISSA ELNRRLQAEN FVIAGGTLRQ DKSVYQVSPK GEFRSLKEIE
DLVLTRGVRL GDIARINYEL PERIEGRHLD QRYAVGLDVF KESGANLVEV SARVMRVIEE
VKADKQFSGI KLFIMEDQAE GVKSSLWDLM MAGLIGAALS FAVLYLFLRN MGMTLIVVSS
VPISICMTLA AMYLLGYSLN ILSMMGLLLA VGMLIDNAVV VTESVLQEKQ KELHESKDKA
VLAGVDKVAL AVLAGTLTTA IVFFPNIFGA KVQLTIFLEH VAIAICISLG ASLLVAKTLI
PLMLTRIHIH HEDKTQKSRV QRFYEESLNW VLTHPKWSTF IAVLMLASTA LPLANVKQDQ
EDGANKQRLF INYQIEGRHA LAVTEAVVAE MESYLYAHKE EFFIDSVYSY YNPERASSTV
LFKKGAEFDL EALKKSMREG FPKFSIAKPQ FGWSNDRQGV RVTLTGRSTS ELIRLSEEAL
PMLSAIEGLE DVNSEVNGAQ QEVLIRVNRD MAARLGTQAS DIARAIATAL RGQMLRSFRH
DPSGEIRIEL AYEKSWQQSL EKLKQLPVLK IDERVYSLSS LAEVDIAPRF DTIRHFNRKT
ALSIGANVEG ITTEEAQEKI KQAMSHLNLP HGYEYSLRGG FERQDEDQQI MVVNMLLAVA
MIYIVMAALF ESLLLPSAII TSILFSITGV FWALWLTGTP NGVMAMIGIL ILMGIVVNNG
IVLVDQINQM TPSLEELSAT IHAVCITRLR PVLMTVGTTV LGLVPLAMGD TQIGGGGPPY
YPMAIAIIGG LSFSTVTSLF LVPLCYQALY RLRHRAAQGL WMANKRTDKL LPWLAGKAD
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