Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1320 |
Symbol | |
ID | 4603572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1604790 |
End bp | 1607255 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780670 |
Product | Ig-like, group 1 |
Protein accession | YP_927197 |
Protein GI | 119774457 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00729266 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.247272 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCAG CGTTTAAGTT ATGGTTGGCC ACCTTCCTCT CGTTTTTATT AATAGCCTGC GGGGGCGGTG GTTCGATTTC AGATACAGGG GGAGGGGATG GTGGTACGCC TCCAACAGAC ACAATTACGG TCACAGCTGC TATAACATTT AGCTCTTCCA ACAGCACCAT TGGCATAGAT ACTCCGGCCA CAGTGACAGC AAATGTTAAA GGATCGCTTT CTGGTGCAAA AGCTGGAAAA TTGGTCACCT TTAAACTGAA TAACGCATCT TTAGGCACTT TTACCCCATC CACAGGAACA GCCCTGACCG ATGCAGAGGG TAATGCCACT ATTACGCTGA GTACGGCAGA TATTGCCGGA GCAGGAACAG TCACTGCGAG TGTCGACACC GGTGAGTCCA GCGACCCTGT TGGTTTTACC ATGAAAGGTG ACGGCGGAAG CTCAACCGGT GGTGAAGCCC AGGTGAGCTT GACGCTTACC GATGCAGATG GTGCCCCAAC CGATACCATT TCGAGCACCA AGCCCGGCAA GTTGGTTGCC ACTGTTTCAG GTATTTCCAA GACAGTCATT GTTACATTCA ACTCTTCCCT TGGCGATTTG CCGATTAAAA CCGCGATTAC AGATGCAAAC GGCAAGGCCA GTGTCGATAT TTATGCAGGC AGTCAACCTG GTGCTGCCGA GGCTACAGCG ACTCTTTCAA CCGGTGAAAG CGGCCAGAAA GTGTTTGTGA TTGGCGCCAG CAATGTGCTG ATGGGAACTG CTGAAGGCGA CTTTGTTGCG GGTAAGGCCT CTGTGAGCGC CAGTGCTATT TCTGCAGGCG GTACTGCGAC GGTTTCTGTC AAGCTTCAAG ATGACCAGGG TATCCTCTTT ACCGAACCTG TCAGTGTCAG CTTCTCGTCA ACCTGTGCGA CCAAGGGGCA AGCTGAGCTA AGTAGCCCAA TTACTGCCGT TGGTGGTATC GCGACCAGCA CTTATTTGGC TAAAGGTTGT GTGGGTGATG ACAATATCAG TGTCTCAGCA GATGTAGGTG GCAAGAACCT GTCAGCGACT GGCACATTGA ATGTGCTTGC AGCAGATGCT GGCAGTATTG TCTTTGTCGG AGCAACTCCT GAAAATATCA GTATCAAGGG CACGGGTGGT GATGAGTCAT CCACTGTGAA GTTCAAGGTA CTAGATACCA ATGGCAACCC GGTGGCCAAC AAGGCTGTGT CTTTCACGTT AAACACCTCC GTGGGGGGCC TGACGCTAAG CCCAGCCACA GCCACTACCA ATAGCCAGGG CATTGCCCAA ACAGTGGTAA CTTCCGGTGC AGTGGCAACT ACGGTGCGAG TTACTGCATC GATTGACGGC ACCAACCCGG TTATTTCGAG CCAATCCAGC GTGCTGGTGA TTTCTACCGG TAAGCCCGAT CAGGACAGCT TCTCTTTATC TGCCGAAGTA TTGAATGCTG AAGGCTGGGA TATTGATGGC ACCGAAGTGA AGGTGACAGC GCGTCTTGCG GATGCCTTTA ACAACCCAGT GCCAGATGGA ACGGCGGTTT ATTTCACCAC TGAAGGTGGT TCAATAGACC CGTCCTGTAC CACTGCTAAT GGAGCCTGTA CTGTCGTATG GCGCAGTCAA AATGCCAGGC CTGGCGGCGT GACGCTTATC GACGGTTCGG GCGCCATGGT TCGTAACCCA ACGCCTGTGT TGGTAGAAGA TGGTGGTCGC TATTACGGCT TCTATGGCCA GAAGTTTGGC GGCCGCGCAA CCATTACCGC CACCGCTGTA GGTGAAGAGT CCTTCCCTGA TACCAACGGT AACGGCCGAT TTGATGCTGC GGAAATGGAT GCCTTCTTAA ATGGAACCGA TGTTAGCGGC GACAGCTACG ATTTGGCTGA TGCCTTTGTC GACCATAACG AAGATGGCAT ATTCAACCCT CAGCAAGCGG GTGGTCAAAC CGGTGGCGAA AATGAAGAGC TCGTTGATTT TGACGAAGAC GGGCAATTTG ATGCTGCAGA TAGCAAATAC AATGGCGTGC TGTGCTCAGT GCCTGCCCAT GCCGGCTGCG CAAGTGTCGA TGCTCAGTCA CTCTTCGTCA GACGCAGTCT GGTGCTGGTG ATGTCAGGCA GTGAGGCTTT TGCGACTGCA GCAGACGATG TGGTGATTGA CGACCGTGAT GGTGTGTCAA CCGGCGGCAG CATCGACATT AACGGTAAAT CGACTGCGTC TGTGGTCTTT GCCATCTCTG ATTTGCACAA TCAGCAGATG CCTGCAGGAA CTAAAGTTCA ATTCGCTACA TCGACGGGTT CGATTGCCAG TACCGCCAGC TACACCTGGC CCAGCAGTAA CTACAATGGT GCGAGACAAT TCTCCGTGAC CGTGAAGGGG GCAGACCAAC CTGAGAGCGG CGTGTTCTCT GTGACTGTTA CCACCCCAGG CGGTACGGCC ACCGAGGTAC TGACAGTCCC TGTAAACATC TATTGA
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Protein sequence | MKSAFKLWLA TFLSFLLIAC GGGGSISDTG GGDGGTPPTD TITVTAAITF SSSNSTIGID TPATVTANVK GSLSGAKAGK LVTFKLNNAS LGTFTPSTGT ALTDAEGNAT ITLSTADIAG AGTVTASVDT GESSDPVGFT MKGDGGSSTG GEAQVSLTLT DADGAPTDTI SSTKPGKLVA TVSGISKTVI VTFNSSLGDL PIKTAITDAN GKASVDIYAG SQPGAAEATA TLSTGESGQK VFVIGASNVL MGTAEGDFVA GKASVSASAI SAGGTATVSV KLQDDQGILF TEPVSVSFSS TCATKGQAEL SSPITAVGGI ATSTYLAKGC VGDDNISVSA DVGGKNLSAT GTLNVLAADA GSIVFVGATP ENISIKGTGG DESSTVKFKV LDTNGNPVAN KAVSFTLNTS VGGLTLSPAT ATTNSQGIAQ TVVTSGAVAT TVRVTASIDG TNPVISSQSS VLVISTGKPD QDSFSLSAEV LNAEGWDIDG TEVKVTARLA DAFNNPVPDG TAVYFTTEGG SIDPSCTTAN GACTVVWRSQ NARPGGVTLI DGSGAMVRNP TPVLVEDGGR YYGFYGQKFG GRATITATAV GEESFPDTNG NGRFDAAEMD AFLNGTDVSG DSYDLADAFV DHNEDGIFNP QQAGGQTGGE NEELVDFDED GQFDAADSKY NGVLCSVPAH AGCASVDAQS LFVRRSLVLV MSGSEAFATA ADDVVIDDRD GVSTGGSIDI NGKSTASVVF AISDLHNQQM PAGTKVQFAT STGSIASTAS YTWPSSNYNG ARQFSVTVKG ADQPESGVFS VTVTTPGGTA TEVLTVPVNI Y
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