Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1252 |
Symbol | |
ID | 4603504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1537855 |
End bp | 1540578 |
Gene Length | 2724 bp |
Protein Length | 907 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639780602 |
Product | TonB-dependent receptor |
Protein accession | YP_927129 |
Protein GI | 119774389 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000104446 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000165135 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGCTTAAGA ACAGCATGCT GGCAAAATCT GTGCGTTTTG CCTTAGTAGC AGGTGCGACG ACTGCAGCGT TTACCGCGCC AACTGTATAT GCAGCTGACG AGGGCGAAAA AGTCGAGCGT ATCGAAGTAA CTGGCTCTCG TATCAAGCGT ACTGACCTTG AAACTGCCAG CCCGATCACC ATGTTTTCTG CTGAAGACAT CGCGAACTCA GGTGTAGCTA CCCTCGAAGA CTTCGTACAA AACATTCCTG CCATCAACGG TGGCGCCGAA GGTTCTTCTG TAAACAACGG TAGCCGCGGC TTTGCGACTG CTTCTCTGCG TGGTCTGGGT TCAGGCCGTA CTCTGGTTCT GATCAACGGT CGTCGTTTCG CTTCTGGCGA TTTGAACTCT ATTCCTACTG CTTACGTTGA GCGTATCGAA GTTCTGCGTG ACGGTGCTTC CACCGTTTAC GGTTCTGACG CTATCGCCGG TGTAATCAAC TTCATCACCA AGAAAGATTT TGAAGGTATT GAGTTCGGTG CTCAGTACGA TATCGCCAGT GAAGGCGACG GTGAGAAGAC TCTGCTGTCT GTGACCACTG GTACTTCCAG CGATCGCGGC AACGTGGTTA TGTCTCTGCA ATACACCAAG CGTGAAGCGA TTTGGCAGGG CGATCGTGAT TTCTCTGCTT GCCCAATATT TGAACGTGGT GGTGAGAAAG TTTGTGGTGG TTCAGGTACC ATCCCTTACG GTCAATTCTT CTATACTGGC GCTAACAGCC CAGCCGGCGG TCACGTAATT GACCCATCAA CTGGTGCAAT TCGTAAGTTT GACCAAGCGG TTGATGGTTA CAACTATGCC GTTGCCAGCT ACATGGTGAC CCCTCAGGAA GTGTTCAGCA TCAACGGTGC TGGCCGCTAC GAAATCAGCG ATACCCTGAC CGGTTTCATG GAAGGTGGTT TCACCAACCG TCAGTCTGAC CAGTTGATGG CACCAGAAGG TACCTTCTGG GGACCAACCA TGCCAGCCTC AAACCCATAC AACCCAACCG GTGAAGACCT GATTGTGGTG CGTCGTCTGG CAGAGACCGG CGGTCGTGGT TTTACTCAGG ACTTCTCCGA CTACCGCATG GTATTTGGTC TGGAAGGTTC TCTGGGCGAT TACTACTGGG ATCTGTCATA CAACTTCGCA CGTTATGTTG ACTCACGCCT GGACTTGGGC CGTGTAAACC CGACTCGTGC CGAAACCCTG CTTGACCCGG ATCTGTGTGC TAAAGATTCA GATTGCCCAG GTATCTGGAA CCCACTGGCC GAAGGTACTC TGACGCCAGA AATGCTGGCT TACGCCTTCG TACCTAACTC GCCAGTGGTT CGCGGTGAGA CCCGTCAGCT GCAGGGTAAC ATCTCCGGTA GCCTGTTCGG TCTGGAACTG CCAGGTGGTG AAGTCATGTT CGCTGCCGGT TTTGAGAAGC GTTGGGATGA ATACCAGAGC GTACCAGATG GTGCGGCTTC TATCGGCCAG ATCTACTCTG TAGCTGGTGA GCCAACTTCC GGTGACTACT CTGTAAACGA AGCTTACGCT GAATTCGATA TGCCAGTCCT CGAAGGCCTG CCATTCGCCG AGTCTGTACG CGTAACTGCT GCCGTACGTT ACTCTGACTT CGACTTCCTG GATGATGGTT CTACCAACAC CAAGTTCGGT CTGGAGTGGG TACCATTCGA CGGTCTGATG CTGCGTTCTA CTCTGGCTGA CGGTTTCCGT GCACCAAGCG TGAGCGAACT GTATGCTCCT CAGTCTGAAA CCAACCTGGC CTACGCAGAG CCTTGTAAGA ACTACGCTAC CGGTACTCAG AACGCGACCG TTAAAGCCAA CTGTGCTGCC GAAGGTCTGC CAGGAAACTT TGAACTGTCT TCTAACCAGT CTTCTACTGT AGTGGGTGGT AACCCAGATC TGCAGCCAGA AGAGTCTGAA AGCTTTACTG CCGGTTTCGT ATACAGCCAC GACATCGGTT TCAGCGCCAG TGTTGATTAC TTCAACATCG AAATCACCAA CGGTATCGGT ACTGCCGGTA CTGACAACGT GGTTAGCGCT TGCTGGAACT CAGCCAACTT CTCAAGCCCA CTGTGTGACC TGATCAAAGG CCCAAGCTTG ACTGGTGATG CTCCACACCC AACTTCTCCA TACCGTACTG CGCTCGGTCC AGTTGCAGGT ATCCTGCTGA CCAACGCCAA CCTGTCTACC TTCGAGACTT CAGGTTATGA CTTTGACCTG TCTTACAAGA CTGACATCGG TGAAGGCCAG TTCTCTGCAC TGCTGAACGG TACTTACCTG GAGCAGTATG ACTACCTGCC ATACGAGGGT GCTGACATCG TTTCTGCCGC CGGTAAAGTG GCTGCTGACC AGTGGGAAAC CACCCTGGCT GTGTTCCCAA GACTGCGTGC CAACCTGTCT TTGAACTACA CCATGGATAA CTGGTCTGTA AGCTGGCAGA CCCGCTACCA GTCTGAAGGT GAAGACTACT TCGCCAGCGA AGACAACCTG GACAACATTG CTGATTCCAT CTGGTATCAC GATGTACAGG GTACTTACTT CGCTATGGAC AACCTGTCTC TGACTGTGGG TGTGCGTAAC CTGTTCGATG AAGAAGCTCC ATACATCTCC AACAACCAGG ATATGAACAC CATCCCAGTG TCTTACGACA CTGCCGGTCA GTACTGGTAC GCTCGCGTAA ATGTTAAGTT CTAA
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Protein sequence | MLKNSMLAKS VRFALVAGAT TAAFTAPTVY AADEGEKVER IEVTGSRIKR TDLETASPIT MFSAEDIANS GVATLEDFVQ NIPAINGGAE GSSVNNGSRG FATASLRGLG SGRTLVLING RRFASGDLNS IPTAYVERIE VLRDGASTVY GSDAIAGVIN FITKKDFEGI EFGAQYDIAS EGDGEKTLLS VTTGTSSDRG NVVMSLQYTK REAIWQGDRD FSACPIFERG GEKVCGGSGT IPYGQFFYTG ANSPAGGHVI DPSTGAIRKF DQAVDGYNYA VASYMVTPQE VFSINGAGRY EISDTLTGFM EGGFTNRQSD QLMAPEGTFW GPTMPASNPY NPTGEDLIVV RRLAETGGRG FTQDFSDYRM VFGLEGSLGD YYWDLSYNFA RYVDSRLDLG RVNPTRAETL LDPDLCAKDS DCPGIWNPLA EGTLTPEMLA YAFVPNSPVV RGETRQLQGN ISGSLFGLEL PGGEVMFAAG FEKRWDEYQS VPDGAASIGQ IYSVAGEPTS GDYSVNEAYA EFDMPVLEGL PFAESVRVTA AVRYSDFDFL DDGSTNTKFG LEWVPFDGLM LRSTLADGFR APSVSELYAP QSETNLAYAE PCKNYATGTQ NATVKANCAA EGLPGNFELS SNQSSTVVGG NPDLQPEESE SFTAGFVYSH DIGFSASVDY FNIEITNGIG TAGTDNVVSA CWNSANFSSP LCDLIKGPSL TGDAPHPTSP YRTALGPVAG ILLTNANLST FETSGYDFDL SYKTDIGEGQ FSALLNGTYL EQYDYLPYEG ADIVSAAGKV AADQWETTLA VFPRLRANLS LNYTMDNWSV SWQTRYQSEG EDYFASEDNL DNIADSIWYH DVQGTYFAMD NLSLTVGVRN LFDEEAPYIS NNQDMNTIPV SYDTAGQYWY ARVNVKF
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