| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1194 |
|---|
| Symbol | |
|---|
| ID | 4603446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1463578 |
|---|
| End bp | 1464945 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639780541 |
|---|
| Product | Gfo/Idh/MocA family oxidoreductase |
|---|
| Protein accession | YP_927071 |
|---|
| Protein GI | 119774331 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.6508 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGAA TCGATCGTCG TGGATTTTTG AAGGCCTCTA TGGCATCTGT GGCTGCAGCG
GCGCTGGCCG GTTGTGCCAG TCAGCAGGGC ACCAGCGCAA CACCCAAGGC TGCGGGTAAA
TCCGTGATGG GCCTGGTGGT GCCAAAGATG GCCGAAGTGA GAGTGGGCCT CATTGGTGTG
GGTGAACGTG GTGTGGGCTT TATCCATCAC TTCAATAACA TCGAAGGCGC ACGCATTACT
GCTATCTGCG ATACCGATCC TCTGGTTATC TCCCGTGCCC AAAAAATCAT GGCCGATTAT
GGTCGCAGTC AGCCGGCTTA TTACAGTAAG GGGCAGCAAG CCTATCTTGA TTTGGTTGCC
CGCGAAGATG TGGACATAGT GGTCATCGCC ACGCCCTGGG CGCTGCATCA CCCCATGGCC
AAAGCCGCCA TGCTGGCCGG TAAGCACGCC TTTGTGGAAG TTCCCATGGG CATGACCATC
GAAGAGCTCT GGGATCTGGT AGACACCGCC GAGCTGACCC AGCGCAACTG CATGATGATG
GAAAACGTCT GCTACGGCCG CGACGAGTTG ATGGTACTGA ATATGGTGCG TCAGGGCCTC
TTTGGTGAGC TGCTCCACGG TGAGGCGGCG TACATCCATG AACTTCGCTG GCAGATGAAA
GAGCTCGACC GCAAAACCGG CTCCTGGCGT ACCGGCTATC ATGCCCAAAT CAACGGTAAC
CTGTATCCCA CCCACGGCCT GGGCCCGGTT GCCCAGTATA TGAACATCAA CCGCGGCGAC
CGCTTCGACT ATCTCTCGTC CATGAGTTCA CCGGCCCTTG GCCGCGCAGC CTATGCACAG
CGCGAGTTTC CAAAAGATCA CCAGCGCAAC CAGCTCAACT ACATTTGCGG CGACATGAAC
ACCAGCCTGA TCAAAACCGT CAAGGGCCGG ACCATCATGG TGCAGCACGA TACCACCACG
CCACGTCCCT ACAGCCGCCA TAACCTGATT CAGGGCACCA ATGGCGTCTT TGCCGGCTTC
CCCAACCGTA TCGCCCTGGA AAACCATGGT CGCGGCAGTT TCCACGAGTG GGATCAGGAC
ATGGAACACT GGTACGGTAA ATACGACCAC CCGCTGTGGA CCCGCATGGG TCGTGAAGCC
GAGCAGAACG GCGGCCATGG CGGCATGGAC TTCCTGATGT GCTGGCGCAT GATTTATTGC
CTGCGAAACG GCGAGCCATT GGATCAGGAT GTGTACGATG GTGCGGCCTG GTCAGCGGTG
CAGCCCCTGT CTGCCGCGTC AGTGGCCGAC CGTGGCAATT CCCGTGACTT CCCGGACTTT
ACCCGTGGCG TATGGCAGAG CGCCACGCCA CTGGGCATCG TGGAGTAA
|
|---|
| Protein sequence | MAGIDRRGFL KASMASVAAA ALAGCASQQG TSATPKAAGK SVMGLVVPKM AEVRVGLIGV
GERGVGFIHH FNNIEGARIT AICDTDPLVI SRAQKIMADY GRSQPAYYSK GQQAYLDLVA
REDVDIVVIA TPWALHHPMA KAAMLAGKHA FVEVPMGMTI EELWDLVDTA ELTQRNCMMM
ENVCYGRDEL MVLNMVRQGL FGELLHGEAA YIHELRWQMK ELDRKTGSWR TGYHAQINGN
LYPTHGLGPV AQYMNINRGD RFDYLSSMSS PALGRAAYAQ REFPKDHQRN QLNYICGDMN
TSLIKTVKGR TIMVQHDTTT PRPYSRHNLI QGTNGVFAGF PNRIALENHG RGSFHEWDQD
MEHWYGKYDH PLWTRMGREA EQNGGHGGMD FLMCWRMIYC LRNGEPLDQD VYDGAAWSAV
QPLSAASVAD RGNSRDFPDF TRGVWQSATP LGIVE
|
|---|
| |