Gene Sama_1181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1181 
Symbol 
ID4603433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1443797 
End bp1445113 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content58% 
IMG OID639780528 
Producthypothetical protein 
Protein accessionYP_927058 
Protein GI119774318 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCAC CTGCTTTGTC CCGTGCGCCG TTGCCGCAAA ACGCCCCGTC ATCGGGCGCC 
GAGCATGAAC TTCAGCTGCC GCAAGTCATG TCGACACTTG CCGCGCTGGC TTGTGTATTG
CAGCAAGGGG CAGCGCTTTG GGATTTTCGG CCTTTTGACC GCCAGGATAA CCCTTGGCGG
CTAAGCTTTC CCAATCTCTG GCAAGCAATT GAGACGCTTA ATGATGATTG CCTTGACGCG
TTGGATCTGG TGCAGGCGGA ACTCTGTCAT AGCCTTTGGC CAGCGCTGTG CCAAGACCTA
AAGGTAAACG GACTCAAGGT GTGGGATCAG TCGCTTTTTT TATGGCAATT ACCGCACCAC
TCGCAGGCAA GTCAAACCCT GGAGGCGCTG CCGGAACATG ATCTCAGCCG TTTTTCCGCC
GGGATCAAAG GCCGCAAATG GCAACAGATA AGCCGCTTTG CCAATATCGT CAGCCTGCCA
CCTGCCCCGT ATCCCTATCT GGAGTGGTGC GCCGGTAAAG GCCATCTTGG GAGACTCGTT
GGGGCGGTAA GCCACAAGCC TGTGCTGAGC CTCGAGTGGC AGCAACAGCT GTGCATTGAC
GGAGAAAAGG AGGCGCAAAA GCGGGGTGTC AACCAACGCT TTGTCTGTGC CGATGCCTTT
TCAGACGAGG CAGAGTTACT CCAGCGTGAG CAGCATGCAC TTGCGCTCCA CGCCTGCGGT
GAGCTGCATC TGGTGCTGCT AAGGCGCGCC GCCGCAGCCC AAACCCGCGC CATCAGCCTG
TCGCCCTGTT GTTACCACCT TATTCAAGGG GAGCAATACG TGGGGCTCAG CGCCAGCGCC
AGAGCCACAG GACTGGTGCT CGATAAGCAT GGCCTGCAGC TCCCCCTCAA TCACTCGGTC
GTTGCCAGTG CAAAAGAAAA GCAGGACCGC CTGAAGGAAG TTCAGTGGCG CCTGGGGTTC
GACTGCCTGC AGCGCCATTT GCGCCGGGAT GACAGCTACT TACCCTTACC CTCGGTGCGC
CAAAGCCAGC TCTCCGGCAG TTTTGATGCC TTTTGCCGCT GGGCCTGTGA GCTTAAAGGC
CTGGTGTTGC CCGCGGATTT TTATGCTGAT GAATGGTTGG CCAAAGGATG CCAGCGCCAG
CGACTAACCC GGCGATTGGA TCTGGTGGCG CACCTCTTCA GGCCTGTGAT TGAACAGTAT
CTGCTACTGG ACAGGGCCGC ATTTTTGTTG GAATCGGGCT ACCGTGTGAG CCTCAGTGCG
TTCTGTCCCC CTGGGATGAC GCCCCGTAAC GCCCTGATTG ACGCCCGTCG TGATTGA
 
Protein sequence
MSAPALSRAP LPQNAPSSGA EHELQLPQVM STLAALACVL QQGAALWDFR PFDRQDNPWR 
LSFPNLWQAI ETLNDDCLDA LDLVQAELCH SLWPALCQDL KVNGLKVWDQ SLFLWQLPHH
SQASQTLEAL PEHDLSRFSA GIKGRKWQQI SRFANIVSLP PAPYPYLEWC AGKGHLGRLV
GAVSHKPVLS LEWQQQLCID GEKEAQKRGV NQRFVCADAF SDEAELLQRE QHALALHACG
ELHLVLLRRA AAAQTRAISL SPCCYHLIQG EQYVGLSASA RATGLVLDKH GLQLPLNHSV
VASAKEKQDR LKEVQWRLGF DCLQRHLRRD DSYLPLPSVR QSQLSGSFDA FCRWACELKG
LVLPADFYAD EWLAKGCQRQ RLTRRLDLVA HLFRPVIEQY LLLDRAAFLL ESGYRVSLSA
FCPPGMTPRN ALIDARRD