Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1111 |
Symbol | |
ID | 4603363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1347037 |
End bp | 1348848 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 639780458 |
Product | ATP-dependent OLD family endonuclease |
Protein accession | YP_926988 |
Protein GI | 119774248 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATGG AACTTTCAAA AATAAAGATA TCAAACTTTA GGTCAATAGA CAGAATAGAA TTCACTCTGA GGAATTATAC ATCGTTGATC GGGCCTAATA ATGCTGGTAA ATCAACAGTG TTGAGTGCTA TAGATTGTTT TTTGAATCAG ATTAAACCTC AGCTATCTGA TTGGAGAAAT CATAATTATG ACGAGCCTGT GATAATTGAG TGCTTATTTA CAAATTTACA GCCATGGGAG TCTACATGTC CTGGTGTTGC TGGCATTGTT CAAAATAATG AAATTCACTT GCGTTTAGTG GCGTCGGCAG ATGTTGCCAA TTCTTCAGTT AATGTTGAGT ATGAAGCTTA TATTAGAGAA GAGCAAATTG AAGGTTGGTC CTCTGGATGG AGAGATTTAT CTCAGACCAT CAAAGAAATT GCAAGCGAAC GAGGTTTCAA CGGCACTAGC TGGAAAACAG TATCAAACAG AGAAGTTATA AAGCAGCATC TAAGGGAAAA TCATCCAGAA CTGATTGCTG CGGGTGATTA TATCTGGACT AGTGAAGGTA TTAGCATTAA ACCCGCTTTA CAACAAGCTT TACCCAAGTG TGTGGTTATA CCGGCGGTTA GCAAGATTGG AGATGACCTG AAAACCACTG GGAAATCGCC ATTTAATCAA CTTTTATCTT CCGTTGTTAT GCCAGCAGTC GCGCGTTCAG AAGAATTTAG AGGTTTACAA TCAGCAATTC AGTTATTAAC TGATAAAATG CGGGGGCAGT CTGAAGATGA GTTCGAAGAG ATTAGGCGTA TAACCGATTT ATTGACCGAA CGTTTGTCAA GTATATTGGA TGCCGAAGTT ATAATGAGTC TTAATTCACC AGACTTTGAG AAGTTTATAA ACTCTGGCGC AACACTTTTA GTAAATGATG GGCATACAAC ATCCCCTGAT AATCAGGGAA GTGGTGCACA ACGAGCTCTA ACATTTGCAC TGCTAGAAAC AATAACGAAA ATGGAAATTG CTCAAGAAGG TGAACAGGTT AAGTCAACCT TGTTACTGTT TGAAGAGCCG GAGTTGTATA TTCATCCTCA TTTAATGAGA AAGCTGAAAT CCATACTTGA GACTATTGGC GCCAGTAATC ATTGGCAAGT GATTTCAACA ACTCACTCAC CGTTTCTGAT TGATGTAGCT TCAGACCCTA TGTCGTTAGT CCTGGTCTCA AGAAATGGTA GGGGAAGCCC TACAGAATTA AAGCAGTTGC AATCTGATCC ATTTTCCAAT GTTGAAAATG GAGATAGAGA GCGACAAGCC TTAAGAGCGA CCTTAGATTT TCATCCAACA GTATGTGAAG CGTTTTTTGC TAGTCGTGTG GTTTTAGTTG AAGGCGATAC AGAGGTGGCT ATCTTCAAGA GAGCATATGA GATTCTTGAT GCACTTGAGA TGGATACAAG CAATGTAGAG AACACCACAA TAGTTTCTTG CGGAGGTAAG TGGACAATCC CCGCAATTGC AAGGTTACTA GCTAACTTTG AGGTGCCATT TAGAATTGTT CATGATTTGG ATCGAAAAGG TCGCACAGAC GATGAGTTAC AAGTTGCAAC GGGTATTGAT CCTTATCGAG CCAATGCAAA AATTGACAGC GCAGCACCGA ATGTAGATAA ATTTTTGGTC GAAGATACCC TAGAGGATTT ACTATGGCCT AATTCTCGTT TATCTGGAAA AGACAAGCCT TATCAAGCAT GGAATAGAAT TAGCGACTTA CTTGGAAATG TTGGAGAGCT TCGCGATTTA CATGACTTTG AGAGAATGCT TCGCTTTGTG TATGAATGGT AA
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Protein sequence | MEMELSKIKI SNFRSIDRIE FTLRNYTSLI GPNNAGKSTV LSAIDCFLNQ IKPQLSDWRN HNYDEPVIIE CLFTNLQPWE STCPGVAGIV QNNEIHLRLV ASADVANSSV NVEYEAYIRE EQIEGWSSGW RDLSQTIKEI ASERGFNGTS WKTVSNREVI KQHLRENHPE LIAAGDYIWT SEGISIKPAL QQALPKCVVI PAVSKIGDDL KTTGKSPFNQ LLSSVVMPAV ARSEEFRGLQ SAIQLLTDKM RGQSEDEFEE IRRITDLLTE RLSSILDAEV IMSLNSPDFE KFINSGATLL VNDGHTTSPD NQGSGAQRAL TFALLETITK MEIAQEGEQV KSTLLLFEEP ELYIHPHLMR KLKSILETIG ASNHWQVIST THSPFLIDVA SDPMSLVLVS RNGRGSPTEL KQLQSDPFSN VENGDRERQA LRATLDFHPT VCEAFFASRV VLVEGDTEVA IFKRAYEILD ALEMDTSNVE NTTIVSCGGK WTIPAIARLL ANFEVPFRIV HDLDRKGRTD DELQVATGID PYRANAKIDS AAPNVDKFLV EDTLEDLLWP NSRLSGKDKP YQAWNRISDL LGNVGELRDL HDFERMLRFV YEW
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