| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1084 |
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| Symbol | |
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| ID | 4603336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1311233 |
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| End bp | 1312921 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780431 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_926961 |
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| Protein GI | 119774221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.287669 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCCCGT CTGAGCAACC GAGAATCACA ACACACATCA TGGCTCGAAT ACTTGCAGCG
ATATTAGGCA TTGCCCTGCT TCTTCCTCTG CTTTGGTCAG CGAAGGTCAA TGCCGCAGTT
GCTCTGGATG CGCCTTACCA GTTTGTGGCT GCCGACGATG ATGTACTTCC CACAGCCTTT
GACGCCGTGC CCGATTGGCT TGATAAGCAC AAAGACATCA AAAGACTCCC TTTAAGCGGT
GGCCAGTTTT ATCTGGCTGT GCCCTTTATG GTGAATGAAA ACCGCAGTGA CTGGGTGGTC
AACTTGCATA ACTCCATCGC CGAAAAGGTG GACTATCTGG TGCTTGGGAG GGATGGCAGT
CGTCAGCTGG CGAGCAGCGG CTATTACGCG CCTTATCAGT ATCTTTTCGA TTACGGCCGT
AACGTCACCC TGAGATACGG GGTGGAATAT TGGCTGCTGG TCCGGGTGGA GTCGCGCTAT
TTCTCATCAT TTCCCAAACT CGAAATCAAT CCGGCTCCCG AACATCGGCA GCTAACCGAT
GGGTTGGCGG TGGCCGTGCT GCTTTGTCTG GGAGGGCTGC TGTTTATCGC CTTCTACAAC
TTGCTGATTT ACGGCTCCAC CAGAGACAAG GCGTTCCTGT ACTACGGGCT TTATGTCATT
GTGTATCTGC TCGGTTGGGC CTTTACCTTC CATGTCCCTG CGCAGCTTTT GGGAATTCAT
GCTATTGGTG TGCATCATGT GTTTTTTATC GGGCTGCCAA TTTTTAATAT TTTGTTCTAT
AAACACTTTT TGCAACTCCC CAGCAACTCC CCCCGTTTGT GGCGCTTAAG TCAGTACCTG
CTTTGGGCCT GTATTCTGGC GCTGCCAACC AGTTGGCTGC TGATTTCTTA CACCGCCATT
ATTGCTTCGG TCTTGATTGG CGCCTGGATA GTGCTGGCCA TAGTGGCGGG TAATGTGTGC
CTGATGAAGG GCTTCTCGCC GGCCCGTTAT TTCATCATGG CATTTAGCTG TCTGCTGTTA
CCTGCCATGC TGATTCTGCC CGGTAACATG GGGCTGACAT CGGATATTAT CGAATACGCC
GAGTTTGCCA CCCTGGCGGG GGGCACAGCC GACGCGCTGC TGCTTTCTCT GGCATTGGCC
AACAAGCTAA AGCTGCTGTC TGAAGAGCGT AAGGCCTATA TCGAAGAACT GAGCTCCGCC
TGGGAAAAGG CCCGGGTCGA CAGTCTTACC CAAATCGGCA ATAGGTACGC CTTCGATGAA
TATCTGCAAA CCTGCCATAC CTTTGGTGAG GCGGTAACAA AACCTACGGC TCTGGTGCTG
TTGGATGTGG ATGGGATTAA GAAAGTCAAC GACACCCTCG GTCATCAGGT GGGGGATGAA
TTGCTGAGAA CTCTGGTGCA GGAGCTTAAG TCGCTGGATA TCCCCAAACT CAAACTCTTT
CGGGTGGGGG GAGATGAGTT TGCACTCTTT TTGGATGGGG CTTTCTTATC TCTGGTCACC
TCCAAACTGG AAAACATAGA AACCATCTTT GCCCGCCAGG GCTTTACCGA TGCCGGCGTC
AGCTTCGGAT ATGCCCTCGA CAGCGAGGTG CACAAATCCC ACGAATGGTT AAGGTCGGCT
GACACCAGTA TGTATTCCTT GAAAGCCGAA AAAAGGCGTG AGTTGGCTGT CGATGCCATG
GAGGCATGA
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| Protein sequence | MAPSEQPRIT THIMARILAA ILGIALLLPL LWSAKVNAAV ALDAPYQFVA ADDDVLPTAF
DAVPDWLDKH KDIKRLPLSG GQFYLAVPFM VNENRSDWVV NLHNSIAEKV DYLVLGRDGS
RQLASSGYYA PYQYLFDYGR NVTLRYGVEY WLLVRVESRY FSSFPKLEIN PAPEHRQLTD
GLAVAVLLCL GGLLFIAFYN LLIYGSTRDK AFLYYGLYVI VYLLGWAFTF HVPAQLLGIH
AIGVHHVFFI GLPIFNILFY KHFLQLPSNS PRLWRLSQYL LWACILALPT SWLLISYTAI
IASVLIGAWI VLAIVAGNVC LMKGFSPARY FIMAFSCLLL PAMLILPGNM GLTSDIIEYA
EFATLAGGTA DALLLSLALA NKLKLLSEER KAYIEELSSA WEKARVDSLT QIGNRYAFDE
YLQTCHTFGE AVTKPTALVL LDVDGIKKVN DTLGHQVGDE LLRTLVQELK SLDIPKLKLF
RVGGDEFALF LDGAFLSLVT SKLENIETIF ARQGFTDAGV SFGYALDSEV HKSHEWLRSA
DTSMYSLKAE KRRELAVDAM EA
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