| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1062 |
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| Symbol | |
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| ID | 4603314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1286707 |
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| End bp | 1288023 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780409 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_926939 |
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| Protein GI | 119774199 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTCTG TCGCGCTTTT AGCCAGTGCA AGAGCTGGAT TTCATCCGTA TAATGGTCGG
GCCAGAGATT CGATATGGAT ATTTTTAGTG AAGCAACGGG ACAGTCTCAA ACACAAGCGA
ATTGATACCC TCGGCCTGCG TTACCACCTG ATGTTATTGC TGACGCCCCT GTCAGTGTTC
GTCGGGATCT TTTACCTGTT TTCCCCCGCA GGCTCCCTGC CGTGGATGAT TTTATTACTG
GTGTGCCTGG TGTATCTGAT GGGATACAGC CTCAGCTATT ACCTTCATCA GGGCCGACTG
CAACGCTTGT GGGATCACCT GGAGCAGGTG GTGTCCATTA ACGAAGCCAG CATGGAGCTC
ATCCACCTCT CCAGCCAATA CCAGAATGAA CACGCCTTCC TGGATGCCTT GCTCAATAAG
GCGGTTTCGG TCATCAACGG CGCCGAGATG GGCAGTATTA TCCGGGTCGA TCCCGATACC
CATAAACTCA TGTTTGAATC CGCTGTAGGC CTGGATCTGT CGCGGCTCAA AACCATAGAT
TTCTCTCTGG AGCAGTCTTT TGAATATCGA ATGACCAAGG GGCGCTGCGA TAAGGTGGTG
GTCATCGATG ATATGCAGCA TATCAATGCC CAAAGCACCC TGACCCCGGC CGAGCAGCAC
ATTTTGCTTA CCGCCGCCAA ACAGCCTATC CGCTCTACCC TCTCAAGCCC CATCCATATC
GACGGCAAAC TCTACGCCAT GCTGAATCTC GACAGCAGTC ATCTGGCGGC TTTCAGCGAT
TATGATCGTA ATCTGGTGGC AATTTTGACC CACGAGGCCG CGAGCGCTAT CGCCTTGTAT
CAAAAGTCGC GGGAAATTCA GCGCCTGGCC AATTTCGACA TCCTCACAGG TCTCCATAAC
AGGCAGTATT TTGAGTCACA AGTCAGCAAG TGGCCCAAAA GCCGTCTCGG CAGTTATCTG
ACGGTACTGG ATTTGGACAA TCTCAAGGTA CTCAACGACA GCCAAGGCCA TCAGGCCGGT
GACGAGGCGC TGGCAAAATT GGCCGATGCC TTAAAAATGA TCTGGCCGCA AAACAGCCTT
ATCAGCCGTT TTGGCGGTGA TGAGTTCGTC ATACTCACCC AGGGCAGTGA AGAACAACTG
CTGGAGCGAT TGGCGCAGCT GAAGCGCACC ATGGCCAGCA CTGAGATGCA GGTGCTCTTC
AGTGCCGGGC TAGCCCCTTT CAATGGTGAC TTTGCCGCCA GCTTCAAACT GGCCGATGAG
CGTATGTACG CGCAAAAGCG CAGCAGACAC AAAGTAGCAG GTAAAGCACC AGCCTGA
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| Protein sequence | MASVALLASA RAGFHPYNGR ARDSIWIFLV KQRDSLKHKR IDTLGLRYHL MLLLTPLSVF
VGIFYLFSPA GSLPWMILLL VCLVYLMGYS LSYYLHQGRL QRLWDHLEQV VSINEASMEL
IHLSSQYQNE HAFLDALLNK AVSVINGAEM GSIIRVDPDT HKLMFESAVG LDLSRLKTID
FSLEQSFEYR MTKGRCDKVV VIDDMQHINA QSTLTPAEQH ILLTAAKQPI RSTLSSPIHI
DGKLYAMLNL DSSHLAAFSD YDRNLVAILT HEAASAIALY QKSREIQRLA NFDILTGLHN
RQYFESQVSK WPKSRLGSYL TVLDLDNLKV LNDSQGHQAG DEALAKLADA LKMIWPQNSL
ISRFGGDEFV ILTQGSEEQL LERLAQLKRT MASTEMQVLF SAGLAPFNGD FAASFKLADE
RMYAQKRSRH KVAGKAPA
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