| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0938 |
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| Symbol | |
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| ID | 4603190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1132332 |
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| End bp | 1134977 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780273 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_926815 |
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| Protein GI | 119774075 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.268052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCAT CTACCTTTAA AAAGAGTGTC CTCGCTACCA ATATCGCAAT CCTCCTCGGT
GGTGCGGTAT CAGTAGGTGC AGTGGCTGCC GAAGCTCCGG TTGATACTGC AAATATTGAA
AAAATTGAAG TGCGCGGTAT CCGCGCGTCC AACAAAGCCA ACATCAATGA AAAGCGTTTT
TCCAACGCTG TAGTCGATGC CGTTACTGCC GAAGATATTG GTAAACTCCC TGATTCCGAT
GTGGGTCAAG CACTTGGCCG TGTACCCGGT GTGACCGTAG GTCGCGCTTT TGGCCAGGGC
AGTTCAGTAT CTATCCGTGG TACTGATCCT CTGATGACGC TTACCACCCT GAATGGCCAA
AACGTGGCTT CGACCGGTTG GTACGATCAG ATGAACATCG ACCGTTCATT CAACTACTCA
ATGCTGCCAG CAGAACTGAT TGGCGGTATG GAAGTGTACA AAACCACCCA GGCCAACCTC
GTTGAAGGTG GTATCGGTGG TACAGTTATT GTTAAAACCC GTAAACCACT GGATATGGAA
GCTAACTCGA TTTTTGGCTC CGTAAAGGGT GAATACGGTT CAATCAATGA AGAGTGGGCC
CCCGAAGTAT CGGGCCTCTA CAGCTGGAAA AACGAAGCCG AAACCTTCGG TATTCTGGTT
TCCGGTGCGT ACGTAGACCG TGAATATCTG CGTGTGGGTA CCGAGGCGGA CCTCGATTGG
GGTGGCCGCT CTTCTATCCA GCCTTCAAGC TTCCTGCAAA GCCAGGAGCG CACGGCGCTG
GATGCCACCT TGCAGTATCG TCCTACTGAC AACCTGGAGT TTGGTGCCCA CATCCTGTCG
CTGAAACTGG GCGCTGACAG CATTGGTGCC AACATGTACA TCAATACCGA CACCAACTGG
GGTGCCGGTG ATTCTCACTG CCAGCAGTTT AACGATGCTG GTGTATGTAC TTACAGCGAT
ACACCGGAAA GCGATCCATC AGACGTGTTC TTCCAGAACT GGGCACGTAA AGGTGAAATG
ACTTCTGATA CCTTCGAACT GAACATGGAA TACGATGGCG ATGGTTATGC CATTGCTGCC
GTAGCCGGTA AGACCAAGGC GGAAGGTGGT ACTCAGATGA GTGCGAACTT CGGTTATGGC
TGGTGGGGAG ACAAGTTTAA AGATATCAAG TGGGCTGGTG TGGTTGATGC CACCGGAAAG
CAAATTGATA TCAACGGCCG TGACATGAGC TTCGGTATCG ACAATCTTGA CACCACAGTG
GGCACTTCCC AGTGGACCGG TATCCAGGGC CCAAACACCG ACGAAGAGTC TTACGTTCAA
ATCGACCTGG ACTTCGATCT GGATCTGGGT GCTATCAACA AGTTTGAAAC CGGTATCCGT
TATACCGAGC ACACTTTCGA GAAGAAAGAG TATCGTGCCG TGTATGGTAC CTTGCCAAAC
GTGTTCAACA GCACCGATCT GTACAGCGGC ACCATGAAGC TGGGCTATGA CGAATGGACC
ATTCCAAAAG CCAACCTGGA TGCCATGATA GATGCAACCG TGTCTCTGGT GGATGAGTTT
GTCTACAGCC GCCCAGCCTA CGGTAAAATC GATGAAGATA ACCTGTCTCT GTACGGAATG
TTCTCCTTCG AAGGCGAAGG TTTCCGCGGT AACTTCGGTT TGCGTTATGT TCAAACCGAC
GTGACGTCAA GCGGCCACGT CATCGATAAC TCTCCGGCAG ACAACCTGGG CATCAACGCC
GGTTGGAGCG AAGAAGTTCA AAGCGTAAGC GACAGCTATC ACGATGTACT GCCAAGCGTA
AACGTGGCAT TCGATCTGGC TGATGACGTT ATCCTGCGTT TGGCAGCTGG TCAGGCTATC
ACCCGTCCAA ACTACGACAA CCTGTTCCTG TCGTCTTCAT CTGGTTATCC GGATGACCGT
CGTGGCAACG AGCAAATCAC CTACGGTAAC CCAGGTCTGG AGCCAATGAA GTCGTCTCAG
GCTGATGTCA GCATCGAGTA CTACTATGGT GATGGCAACC TGTTTGCTGC TACCTACTTC
ATCAAGGATA TCAGCAACTT CATCGTTGCA ACTGCCCCGG AAACCAAGGC GATTGGCGTA
ATCAACAATG ACCTGGAAGT GCCTGCGGAC AGCTGGATTG TAGACAGCTA CATGAACGCC
GGTGGTGGCT CTATTGACGG TATCGAACTG CAATTGAACC ACGCTTGGGA TAACGGCTTT
GGTATCAACG CCAACTACAC CTTTACCGAT GGCACTGCCC CTGCAGAAGT GTACACCGAT
AATATCGGCG TATTCACCGA AGCGTCCAAG CACACCACCA ACCTCGTTGG TTACTGGGAA
AATGATACCT TCTCAGCCCG TGCAGCCTAC AACTGGCGCA GTGAGTACAT GGTGCGTGAA
TACGGCAAAT ATTACGGTAA CCGCATGCAC GATGACTTCG GTACTCTGGA TGTGACACTG
GGATGGAACG TGACCGAGAA CATCGCACTG CGTCTCGAGC TCATCAACCT GACTGCAGAA
GATGACGTTC AGTACGGCGC TGCCGGTGTG GGTACTGCCG TTAAGCCTGC GCTGCAGGAT
GGTTACCCAA CCTGGTCGTT CAAAGGTGAA ACCACTTATA AGCTGGGCGC AAGCTTCAAC
TTCTAA
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| Protein sequence | MRPSTFKKSV LATNIAILLG GAVSVGAVAA EAPVDTANIE KIEVRGIRAS NKANINEKRF
SNAVVDAVTA EDIGKLPDSD VGQALGRVPG VTVGRAFGQG SSVSIRGTDP LMTLTTLNGQ
NVASTGWYDQ MNIDRSFNYS MLPAELIGGM EVYKTTQANL VEGGIGGTVI VKTRKPLDME
ANSIFGSVKG EYGSINEEWA PEVSGLYSWK NEAETFGILV SGAYVDREYL RVGTEADLDW
GGRSSIQPSS FLQSQERTAL DATLQYRPTD NLEFGAHILS LKLGADSIGA NMYINTDTNW
GAGDSHCQQF NDAGVCTYSD TPESDPSDVF FQNWARKGEM TSDTFELNME YDGDGYAIAA
VAGKTKAEGG TQMSANFGYG WWGDKFKDIK WAGVVDATGK QIDINGRDMS FGIDNLDTTV
GTSQWTGIQG PNTDEESYVQ IDLDFDLDLG AINKFETGIR YTEHTFEKKE YRAVYGTLPN
VFNSTDLYSG TMKLGYDEWT IPKANLDAMI DATVSLVDEF VYSRPAYGKI DEDNLSLYGM
FSFEGEGFRG NFGLRYVQTD VTSSGHVIDN SPADNLGINA GWSEEVQSVS DSYHDVLPSV
NVAFDLADDV ILRLAAGQAI TRPNYDNLFL SSSSGYPDDR RGNEQITYGN PGLEPMKSSQ
ADVSIEYYYG DGNLFAATYF IKDISNFIVA TAPETKAIGV INNDLEVPAD SWIVDSYMNA
GGGSIDGIEL QLNHAWDNGF GINANYTFTD GTAPAEVYTD NIGVFTEASK HTTNLVGYWE
NDTFSARAAY NWRSEYMVRE YGKYYGNRMH DDFGTLDVTL GWNVTENIAL RLELINLTAE
DDVQYGAAGV GTAVKPALQD GYPTWSFKGE TTYKLGASFN F
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