| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0835 |
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| Symbol | |
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| ID | 4603087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1018134 |
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| End bp | 1019975 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780170 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_926712 |
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| Protein GI | 119773972 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.121118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAGG CGTTTTATGG GTTAAAGGAC AACCCATTTT CCATTGCACC CAATCCAACG
TATCTGTTCC TCAGTGACAG GCACCGAGAG GCACTTGCAC ACCTGACCTA TGGGCTTGGT
GAAACCGGCG GTTTTGTGCT GCTCACCGGC GAAGTTGGCA CCGGCAAAAC CACGGTCTCC
CGCTGCTTAT TGCGTCAATT GCCCGATACA ACTGATACCG CATTTATCCT GAACCCGGCC
CTGACCGAAC TTGAGCTGCT GGCAACCCTT TGTGATGAAC TCAAGATCCC CTATGGTGAA
TCCCCCAGTC TTAAGCGGCT GACTGACCTC ATCAGTGGCT TTTTACTTAA GAACCACAAC
GCCGGTCGTA ATACAGTACT GATTATTGAT GAAGCACAGC ACCTCAAAGC GGAGGTGCTC
GAGCAGCTCA GGCTGCTGAC CAACCTCGAA ACCGATACCA AAAAGCTGCT GCAGGTGATC
TTGATTGGCC AACCTGAGCT GCAACAACTC CTCAAGCGTC AGGAGCTCAG ACAGCTCGCT
CAGCGCATTA CAGCCCGTTA TCATCTATTA CCCCTTACCG CAGAAGAAGT CGGCCTGTAC
GTGCAGCACA GGCTGCAGGT GGCTGGGAGG TTTGAACCCC TGTTCAACGC AGGTGCCATA
AAGGCGTTGC ACAAGGCCAG TGGCGGTATT CCCCGGATCA TTAATCTGCT GTGCGAGAGG
GCTCTAATGG CGGGCTTTGC CCAGAGTCGG GTGCCCATCA ATAAGCAGAT GGTGCGTCAG
GCTGCAGTTG AAGTTCTGGG GCTCGAACCC CAAAGACCAT CCTGGTACGA GCGCCCACTT
CCTATGACGC TGGCCACGGC CCTGACATTT GGCGTGGCGC TGTATGGCTT TAATTACCTT
AATCAGCCCG TGACGGCGGC CACATCGCTC GCGTTGCCCA TTGCGGACTC ACCTGTGCAG
GGGGCCCCTG TGCAGGCAGC GCCTGAGTCG CTGCAGCCTG AGTTGCAGCC GACTGCAACA
GTTAATCAAA GCACGATCGA GCCCTTGCAA CCGGATTCGT CTGGGGTAAC CTCAGGCGCA
CAATCTGAAA CGGCGATGGA GAATTTGGCA GATATTGCCA CGGATAGCAC GCTACAAAAC
CAGGTCTTGG CACAGAGCTC GCCCATCAGC CGCATCACGG ATGCCGGGGC AGAGCTTGCC
GAGCTTGAAG CCCGTCAGGC AAAAGTGCGC GAACGGGTGC TGACGGACGC TGTGGCACAA
AGCCGCAGTT TGGATACGGC CTATGCTGCT CTCTTCGGCG CCTGGGGCCT GGCGCCGATA
AAAGATCTCA GTCCCTGTGA GTCGGCCCGT GAGCAAGGGC TGTCCTGTTT TCAGCAACAG
GGGACCTGGT TTAATTTGGT TAAGCTTAAC TATCCGGCGG TGGCCTACAT GATGGATGAC
GCCGGTGGCG AGTTCTTCGT CACCGTGATT GAGCGGGATG GAGACGAGCT GCTGGTGCAG
CTTGCCGAGC AGCAGCTTTG GGTTAACCGG GACTGGTTCA ATCGCCACTT CACCGGCACC
TTTGAACTCT TTTGGCAGGC GCCTGTCTAC AGCCCTCGGG AAATCGGGAT TGCGTCACCA
CAGCCAGAGG TGCAATGGCT GGAAAATGGT TTGGCCAAGG TCGACAAAAT CACCCCAAGA
TTGGTCAATG AATTTGATAC GGAGCTTGAA AATCGCCTCA AGTTGTTCCA GCGTCAGCAT
GGCCTCAAGG CCGATGGTAT CGCCGGCAGT CAAACTCTGC AGCAACTCAA CCTGTACCTG
AGCAATGAAG GTCCACGCCT GGTGCAGGGA GGGCTGTACT GA
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| Protein sequence | MYKAFYGLKD NPFSIAPNPT YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLRQLPDT TDTAFILNPA LTELELLATL CDELKIPYGE SPSLKRLTDL ISGFLLKNHN
AGRNTVLIID EAQHLKAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQQL LKRQELRQLA
QRITARYHLL PLTAEEVGLY VQHRLQVAGR FEPLFNAGAI KALHKASGGI PRIINLLCER
ALMAGFAQSR VPINKQMVRQ AAVEVLGLEP QRPSWYERPL PMTLATALTF GVALYGFNYL
NQPVTAATSL ALPIADSPVQ GAPVQAAPES LQPELQPTAT VNQSTIEPLQ PDSSGVTSGA
QSETAMENLA DIATDSTLQN QVLAQSSPIS RITDAGAELA ELEARQAKVR ERVLTDAVAQ
SRSLDTAYAA LFGAWGLAPI KDLSPCESAR EQGLSCFQQQ GTWFNLVKLN YPAVAYMMDD
AGGEFFVTVI ERDGDELLVQ LAEQQLWVNR DWFNRHFTGT FELFWQAPVY SPREIGIASP
QPEVQWLENG LAKVDKITPR LVNEFDTELE NRLKLFQRQH GLKADGIAGS QTLQQLNLYL
SNEGPRLVQG GLY
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