| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0686 |
|---|
| Symbol | |
|---|
| ID | 4602939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 848184 |
|---|
| End bp | 848972 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780021 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_926564 |
|---|
| Protein GI | 119773824 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAT TGACACTTGA TGTGGGGGGA ACCAACGGCC TGTTTGAACT CAGGCACGAA
GGTCATACAG AACAATATAA ATTCCCCACC GGTGATGGTT TCTCTATCCG GGATTTAAAC
GAGCAGATCC AGGCCTTTGA ACAGGACTTT GCGCTGGAAC ATTACCGCCT GGCCATGGCC
GTCCCAGGCC TGGTACGGGA TAACCGTTTG GTTACCTGCA AATCGCTGCC GGGACTGACG
GGGCTGCACC CTGCTCAAAT CCAGTGCAGT GGTGAACTCG CCTTTATCGC CAACGATATG
GACGCGGGTA TCCAGGCCAT TGCCGAGCCT CGCCACGATT GCGAAGTGCT GGTGATGTGT
GGTGCGGGTC TGGGTATGGC GATTGCCATG AATGGCCAGG TGTTCAGCGG TGCCAGCGGC
TTTGCCGGTG AGCTGGGTCA CTGCCGTATC ATGACTGAGG GCGGTGAGTT CAGTCTGGAG
CAATTGGCAT CTGCTGAAGC ACTGCGTGGT CGTAAACAGG TAGTGGGGGA CGACTTGGCT
CAGGCGGGAC GTCATCTGGG CATGGGGTTG GCGTGGGTGG TTAACCTTTT CAATCCCAAT
CGCATATACC TGGCTGGCAG CATGATGCAC AGTGCCGATT TTTACAAAGG TTGTATCGGC
GCCCTCAGGG ATATGGCCTT GGGTGCGCCC ATGGCCAATT GTCAGGTTCA CAGAGTCGAT
GATATGGAAA CTCTGGTGTG CCGCGGGCTG GCCAGCATGT TGGAAAAACA GCAGTCAGCA
GCTGAGTGA
|
|---|
| Protein sequence | MQTLTLDVGG TNGLFELRHE GHTEQYKFPT GDGFSIRDLN EQIQAFEQDF ALEHYRLAMA
VPGLVRDNRL VTCKSLPGLT GLHPAQIQCS GELAFIANDM DAGIQAIAEP RHDCEVLVMC
GAGLGMAIAM NGQVFSGASG FAGELGHCRI MTEGGEFSLE QLASAEALRG RKQVVGDDLA
QAGRHLGMGL AWVVNLFNPN RIYLAGSMMH SADFYKGCIG ALRDMALGAP MANCQVHRVD
DMETLVCRGL ASMLEKQQSA AE
|
|---|
| |