| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0680 |
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| Symbol | |
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| ID | 4602933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 841258 |
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| End bp | 842772 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780015 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_926558 |
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| Protein GI | 119773818 |
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| COG category | [K] Transcription |
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| COG ID | [COG1396] Predicted transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGTG AAAAAAGCCT GATGCGCCAA TCCCATTTTC TGGGCACCAA AATCAGAAAC
TTACGGAAAC GCAATCACTT AACCATGGAA GATCTGTCTT CACGCTGTGT ACGTGTGGAT
CCCGGTTCGG CGCCCTCCGT ATCTTACCTG TCGATGATTG AGCGGGGAAA ACGGGTGCCC
AGTGCCGCCA TGCTGGAGGT GATTGCCAAG GTATTTGAGA AATCACCGGA CTGGTTTTTG
GACGATGCGC CCGAAGAAGA CGCCATCACC CCGGACAAGG GACGCCGGGG TGGCATCAGC
GGCATGGCGC TGGAGCCGGG CTTTTTGTTT TCCAAAGATA TTTTGCAGAT TGCCATTCCC
GAAATGCTGT CGCAGACCGG GATCAGCGGC CGCCAGTTTG CCCATTTGCT GATCCGCGCC
CATCAGGAGC ATCATCAAAA TCATTTCCCC GATCTGGAAC GTGCCGCAGA AGAAGTTGGT
GATAAGCGGC TGAATCTCAG TGGCGACGAT CTGACGGCCA TCTGCAAACA GATGGGCATG
AAAATTCGCT TCTTCAAAGA GCCACCTCAG GATCAGGTTG ACGCTAACGG CGTGTCCACC
CATCAACTGG TCACCTCATT TTTCGAGCCA CCCTCCACCA TCTTTATCAA TGAAGCCCTG
AAGAAAAATC CCGAGCGGCT CAAATACGAT TTGGCGGTAC ACATAGGCCA CTGCGTGCTG
CACAACAAGG ACGGCCTGAA GAATGTACTG GCAGTGGGAC GTGGTATAGG CACAGGTGAG
CAGGATGCCG ATATATCCTC CACCGTGAAT GCCCAGGATA TCTTAAGTGC CTGGCGCGAC
TTTGAATCCA GCTTTTTTGC CGGCGCCCTG CTTTGTCCCA AGGTGCCTTT CCGACAGCTA
TTGGAGCGGG GGGGCTATGA AATTGATACC CATAAAAAAA TCGGCGTGTC TGCCTCGGTG
GCCATGCGCC GTATGACTGT GGTCTCTCCC TATCCCCACT GGCATTACTT CGATGCTTAT
GCGCCGGGCA AGCTCAAGGC GGTATATCGG GGTAACGGCA TTCCCCTGCC CTGGGGCAAC
ATGCGTCAGG TGCCGGACCC CTGCCAGCAC TGGGCAGTAT TTCGCATGAT AAGCGAGCCA
TCCGATGGCA GCTCGGCGCA AATTTCCATT CTGGATGTGG GCGGCAGCCC ACGGATTTAC
TGCTGTGAAT CCACCAAGGT GGTGGATTTG GCCGGAAACC ACCATGTGCT CTGCGCAGGG
ATAGATTTGA ACCCCGCCAT CGATGCCCAG GGCACCGATG CCTTAAGTCT CGCCGAGGCA
CTCAAAAGCC ACTGTGTAGC ATCAGGTGGT CAGGGGGAAA TTCCCACTGC CATAAAACGC
CAGCTGATGA GCATTGCCCG GATTCTCAAT ATCAATTGGG TGGAGCGCGG TATCGACAAG
GGTGCCAGAT TGATTTGCTC CCGGGGCAAT GTGTGCCCAC GCAAACCCAG CTGCTATGGG
GGTTGCAAGG GGTAA
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| Protein sequence | MTSEKSLMRQ SHFLGTKIRN LRKRNHLTME DLSSRCVRVD PGSAPSVSYL SMIERGKRVP
SAAMLEVIAK VFEKSPDWFL DDAPEEDAIT PDKGRRGGIS GMALEPGFLF SKDILQIAIP
EMLSQTGISG RQFAHLLIRA HQEHHQNHFP DLERAAEEVG DKRLNLSGDD LTAICKQMGM
KIRFFKEPPQ DQVDANGVST HQLVTSFFEP PSTIFINEAL KKNPERLKYD LAVHIGHCVL
HNKDGLKNVL AVGRGIGTGE QDADISSTVN AQDILSAWRD FESSFFAGAL LCPKVPFRQL
LERGGYEIDT HKKIGVSASV AMRRMTVVSP YPHWHYFDAY APGKLKAVYR GNGIPLPWGN
MRQVPDPCQH WAVFRMISEP SDGSSAQISI LDVGGSPRIY CCESTKVVDL AGNHHVLCAG
IDLNPAIDAQ GTDALSLAEA LKSHCVASGG QGEIPTAIKR QLMSIARILN INWVERGIDK
GARLICSRGN VCPRKPSCYG GCKG
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