| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0674 |
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| Symbol | |
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| ID | 4602927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 830358 |
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| End bp | 831434 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780009 |
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| Product | periplasmic linker protein |
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| Protein accession | YP_926552 |
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| Protein GI | 119773812 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGAA TGATACTGAT GCCTCTGGGG CTGATTGTGC TGCTGGGGAG CTGTCGTCAG
GCACCGGATA TTGAACACAC GCCTGCCAGA GTGGCGGTTT ACACCATTCC CAGCACCGAA
AACCAGGTTA CAAGGGTATT CAGCGGAGTG GCCAGGGCGC AGGATCTCAC CGCCTTGGCA
TTTCGTGTTG AAGGCCGTAT CGCCCGCATT CCGGTTACCA AGGGGCAAAG GGTTAAGGCC
GGAGATGTGT TGGCCGTGCT TGAAAAAAAC GACTTTCAAA TTGCCCTGAA TGATCGTCGT
GCTCGCCTGG ACGTGACCCG CAAGCAGGCC GAACGCTCCA AAACCCTGGT GGATCAACAA
TTGATGGCGC AGGCGGAGTA CGATCAGATG AATGCGGAAT ATCTGGTTGC CCGCGCCGAG
GCCAGACAAG CTGAGCTGAT GCTGGAATAT ACCAAACTCA AAGCTCCCTT CGACGGTTTG
ATTGGCGATG TATTTCTCAA GTCCTTTGAA AACGTTCAGC CCGGTACCCT GGTGCTCAGC
GTCCATAGAA CAGAGCGTAT CGAAGTCGAT GTGCAGGTGC CCGACCTGCT GATAGCTGTG
TCGCGTCGCG CCGAAACCGG TCAACAAAAA CAGGGCTTTG ATGTGGCCTT TGAAGCCTTT
CCAGACAAAA GCTTTATTGG CCACTTGCTG GAAGTAAACA CTGAAAAAGA TCCCCAATCC
CATACCTACG TTGCCACCGT CGCGGTTGAG TTACCCGAGG GGGTTAAGGT GCTCGAGGGG
ATGCCCGCCA AGGTCACTGT GGATTTGGGC AAGGCTACCT ATACCTACCG ACGTGAATAT
CTGTTGCCAA TCAGTGCCGT GGTGATGCGA GACGGCAGTG ATATTGATTT GCAGGATGCC
GGAGTGTGGC TTTACGACTC TGCCACTGGC ACCGTTAAAT TCAAGCCTGT GCGACTTGGC
GTGATTGTGG GCCAAAGTAT TGAAGTCGTT GATGGCCTCG CCGATGGACA GCAGGTGGTG
ACTCAAGGGG CTTCACGCCT CGTGGACGGC CAACAAGTTG AACTGATTCA GGGATAA
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| Protein sequence | MTRMILMPLG LIVLLGSCRQ APDIEHTPAR VAVYTIPSTE NQVTRVFSGV ARAQDLTALA
FRVEGRIARI PVTKGQRVKA GDVLAVLEKN DFQIALNDRR ARLDVTRKQA ERSKTLVDQQ
LMAQAEYDQM NAEYLVARAE ARQAELMLEY TKLKAPFDGL IGDVFLKSFE NVQPGTLVLS
VHRTERIEVD VQVPDLLIAV SRRAETGQQK QGFDVAFEAF PDKSFIGHLL EVNTEKDPQS
HTYVATVAVE LPEGVKVLEG MPAKVTVDLG KATYTYRREY LLPISAVVMR DGSDIDLQDA
GVWLYDSATG TVKFKPVRLG VIVGQSIEVV DGLADGQQVV TQGASRLVDG QQVELIQG
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