| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0525 |
|---|
| Symbol | |
|---|
| ID | 4602780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 648743 |
|---|
| End bp | 649699 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639779861 |
|---|
| Product | putative lipase |
|---|
| Protein accession | YP_926405 |
|---|
| Protein GI | 119773665 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.126958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACT CTCCACGTGG CAAGGCGTCA GCAAAGCTGG CGGAGTTTCT GACCCAGGCC
AATCACAACA TTGCTCTGGT GAGGGAGCAA AACATTCAGT TCACTCCGGC GCTGCTGAGG
GAAAATCTGA ATAAGCTCGC CGCCTTTATG ACCTGTAAAC CCGAGGTGAA CTACATCGCC
GACAAAGCCT GGCAACTGGA TGGCCGAATT ATAGCTGCGC GGGTATACAG TCCAGCGCCG
CACAGTGCCT TGCCTGTGGT GGTGCACTTT CACGGTGGTG GCCATATGTG CGGCAGCGTG
GCGCTATACG ACCCCATCTG CCGCCAGTTG GCAAGCACAG CCCAATGTGT GGTGATAAGT
GTTGAGTACC GTTTGGCGCC TGAATATCCC TATCCTGCGG GGTTGGAGGA TTGCGAGCAT
GCCCTGCGCC ACTACGCCGA AGTGTTGGAG GATGTTGCCT TTATCGCCGG TCCCTGCATC
ATGGGTGACA GTGCAGGTGG CGCCATTTGC ACCAGCCTCA GTGAGCGCAG TCTGGCGGAT
CCGACCCTCG ATATTCGCAA GCAAATTCTG ATTTATCCCA GCGTGGATTA CACCATGGCG
AGCGCCTCTT ACGAGAGCAA CGGTGCAGGC TTCTTATTGG AGACGCCAAG AGTGAAATGG
TATTTCGAGC AATATTTTCA GGATGCAGCC CTGGATACTG AAAAGGTCAG AGCGGCGTCG
CCACTGCACG GCCGTATAGG ATCAGGACTG CCTGAAACGC TGATTTTTAC CGCTGGCTGC
GATCCGCTGC GGGATGAAGG CCGGGCCTAT GCCGAGGCGT TACAGTGCGC GGGTGTAAAG
GTAGAGCATC ACGGGCTGGA GGATATGATC CACGCCTACA TGCTGCTTCA CGATCTGGTG
GCCGAAGAGT GTTTGCGGAC CTATGAGCAC ATTGCCCGCT TTATTAAGGC TGTTTGA
|
|---|
| Protein sequence | MQDSPRGKAS AKLAEFLTQA NHNIALVREQ NIQFTPALLR ENLNKLAAFM TCKPEVNYIA
DKAWQLDGRI IAARVYSPAP HSALPVVVHF HGGGHMCGSV ALYDPICRQL ASTAQCVVIS
VEYRLAPEYP YPAGLEDCEH ALRHYAEVLE DVAFIAGPCI MGDSAGGAIC TSLSERSLAD
PTLDIRKQIL IYPSVDYTMA SASYESNGAG FLLETPRVKW YFEQYFQDAA LDTEKVRAAS
PLHGRIGSGL PETLIFTAGC DPLRDEGRAY AEALQCAGVK VEHHGLEDMI HAYMLLHDLV
AEECLRTYEH IARFIKAV
|
|---|
| |