| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0518 |
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| Symbol | |
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| ID | 4602773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 637904 |
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| End bp | 638665 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779854 |
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| Product | 3-oxoacid CoA-transferase |
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| Protein accession | YP_926398 |
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| Protein GI | 119773658 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.368438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGTGATA GTAAGCGCCA CACATCACCG AGGGTAAGAG AGCAGATTGT GGCGGGATTG
AATAAGGTCG TTACCAGTTA CGCACAGGCG TTGGCCGGAC TCGAAGACGG GATGACAGTG
ATAGCCGGAG GCTTTGGCCT TTGCGGTATC CCTGAAAATC TCATCAAAGA AATCAAACGC
AAGGGCACGC GAAACCTCAC CGTGGTGTCA AACAACTGCG GCACAACCGA ATACGGCCTT
GGCATTTTGC TTCTGGATAA ACAAATCAAG AAGATGGTGG CCTCTTACGT GGGAGAAAAT
ACCAACTTTG AAGCGCAAAT GATGTCGGGC GAACTGGAAG TTGAGCTGAC ACCCCAGGGC
ACACTGGCGG AAAAAATGCG TGCAGCCGGT GCCGGTATAC CGGCTTTTTA CACGGCAACG
GGCTTTGGCA CAGAGGTGGC CGTGGGCAAG GAAGTGAAGG AATTCAATGG CCGGCAGTAC
ATTCTCGAGG AGTCCATCAA GGGCGACTTT GCCCTGGTCA AAGCCTGGAA AGCCGATACC
TATGGCAACC TGGTATTTCG TAAAACAGCG CGTAATTTCA ATCCTTTGGC AGCCATGGCT
GGCAAGATAA CTGTGGTGGA AGTGGAACAA ATTGTCGCGC CCGGCGAGCT GGATCCCGAT
GAAATCCATA CCCCAGGCAT TTACGTCGAC AGGCTGATCC AGGGCAGTTT CGAGAAGCGC
ATCGAGCAGC TCACCATCCG TCCCTCTTCA CACGGTAAAT AG
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| Protein sequence | MGDSKRHTSP RVREQIVAGL NKVVTSYAQA LAGLEDGMTV IAGGFGLCGI PENLIKEIKR
KGTRNLTVVS NNCGTTEYGL GILLLDKQIK KMVASYVGEN TNFEAQMMSG ELEVELTPQG
TLAEKMRAAG AGIPAFYTAT GFGTEVAVGK EVKEFNGRQY ILEESIKGDF ALVKAWKADT
YGNLVFRKTA RNFNPLAAMA GKITVVEVEQ IVAPGELDPD EIHTPGIYVD RLIQGSFEKR
IEQLTIRPSS HGK
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