| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0499 |
|---|
| Symbol | |
|---|
| ID | 4602754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 613827 |
|---|
| End bp | 614441 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639779835 |
|---|
| Product | HAD superfamily hydrolase |
|---|
| Protein accession | YP_926379 |
|---|
| Protein GI | 119773639 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTC GGGCCGAATA TCCAGAATGG CTTGCGGACA TTCGCGCCGT TGTTTTCGAC
CTCGATGGCA CCCTGGCACA TTCCAATCCT GACTTTCCGG CTATCCGGCA GGCACTCGGT
CTTAGTGCCG GGGAGGATAT TCTGGCCCAT ATAGCAGGTT TGCCAGCGGC GAAGCAGGCC
GGCGCCATGG CGACAGTGCA TCATTATGAA ATGGCGGCCT CTCACCGGGC TGAATGGATA
GGGGGCGCAG CAGAACTGCT GCAGTTTGTG CAGCAAAAAA CGCTGCCAAC GGCGATATTG
ACCCGCAATA TGCGCCAGGC GGCTGAGTTG ACACTGTCGC GTCTGGGATT ATCGGTTGAA
GTATTACTGA CCCGGGAAGA TGCCCCGGCT AAGCCAGACC CTGCCGGCCT CATCCACATC
ATGGACATCT GGCGGCTTGA GCCAACTCAG GTACTCTATG TGGGTGACTA TCTCTTTGAC
TTACAGACGG CACGGGGCGC CGGTTGCCGC TCTGCGCTCT ATTGCCCTGA TGGCAAGCCG
GACTACGGCG ACATGGCTGA CTTGCTGGTA CCCTGTTATT TTGAACTCAT TGATTTGTGG
CGCGGCGCTG AATAA
|
|---|
| Protein sequence | MSRRAEYPEW LADIRAVVFD LDGTLAHSNP DFPAIRQALG LSAGEDILAH IAGLPAAKQA
GAMATVHHYE MAASHRAEWI GGAAELLQFV QQKTLPTAIL TRNMRQAAEL TLSRLGLSVE
VLLTREDAPA KPDPAGLIHI MDIWRLEPTQ VLYVGDYLFD LQTARGAGCR SALYCPDGKP
DYGDMADLLV PCYFELIDLW RGAE
|
|---|
| |