| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0463 |
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| Symbol | |
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| ID | 4602718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 568567 |
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| End bp | 569094 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779799 |
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| Product | MSHA pilin protein MshD |
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| Protein accession | YP_926343 |
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| Protein GI | 119773603 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.959402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCTA GTCTCAGCAA GATGCCGGTG TTATCCAAAC GTACAGCGGG ATTTACCCTG
GTAGAGCTGG TCGTTGGCAT GTTGGTGCTC GCCATTGCAC TGGTATTGCT CTCCAGTATG
TTCTTTCCCC AGGCGGACCG GGCGGCCATG ACGCTGCAGC GGGTAAGAAG TGCCGAGCTG
GCCCAGTCGG TGCTCAATGA AATCTGGGGA AAAAGGTACG ATGAGCACAG CAATATCAAT
GGTGGCGTGC CGGCCTGTGG CTCGCCTTCA GCCTTGGCCT GCAGCACTCA CATGGGGCCA
GAGGGAGAAA GTCGCAATGA TTTCGATGAT GTGGATGACT ACCATGGCTT GAATGAAACT
CAGTTTATGC TGAACTCCAG CCAGCGCTAT ATCGACCGTT ACCCCGGCTT CAAATTGACC
GTGGAGGTCA GCACTTCGTC CCCTTTGGTG AGTAAACTCA TCGCCATCCA TGTCACTACA
CCTCAAGGGG AAGTAATTAC TTACCATGCC GTGAGGAGCA ACTACTGA
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| Protein sequence | MPASLSKMPV LSKRTAGFTL VELVVGMLVL AIALVLLSSM FFPQADRAAM TLQRVRSAEL
AQSVLNEIWG KRYDEHSNIN GGVPACGSPS ALACSTHMGP EGESRNDFDD VDDYHGLNET
QFMLNSSQRY IDRYPGFKLT VEVSTSSPLV SKLIAIHVTT PQGEVITYHA VRSNY
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