| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0462 |
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| Symbol | |
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| ID | 4602717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 568086 |
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| End bp | 568577 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779798 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_926342 |
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| Protein GI | 119773602 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.551025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTCAC GTCATTCTCT ATCGCGTGGT TTTACCCTGA TTGAGCTTGT TACCACCATC
ATCCTGATTG GCATTCTGGC GGTGGTGGCC ATTCCGCGCT TGTTATCTGC CTCTTCTTAC
AGTGCCTACT CCCTTCGCAA TGAATTTATG GCGCAGCTGC GCAAGGCGCA GCTCTTTGCC
ATGAACAATA CCGATCTCTG TATTCGTGTT GCTGTGTCCA GCGATAAGGG ATACCGCATA
GAACGGTATC AGAGCCGCAC GTCGAATCAA TGTTCTGGCG CTCAGGACGT GGCCCATGAG
CAGCCCTGGC AGAGTTTTCA GGGGGGCAGT GAGCTGGCGC TGCTTGCTGG TGGTACCCGC
AGTTTTAACC TGGATTTTGA TACCCTCGGC CGACTCCCTG CCACGGGCTG CAACGGCGAC
TGTATCCTGG CTATTGCCGA CGAAACCCTG GTGCTGGCGA TCGAGTCCGA GGGCTATATT
CATGCCCGCT AG
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| Protein sequence | MQSRHSLSRG FTLIELVTTI ILIGILAVVA IPRLLSASSY SAYSLRNEFM AQLRKAQLFA
MNNTDLCIRV AVSSDKGYRI ERYQSRTSNQ CSGAQDVAHE QPWQSFQGGS ELALLAGGTR
SFNLDFDTLG RLPATGCNGD CILAIADETL VLAIESEGYI HAR
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