| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0445 |
|---|
| Symbol | |
|---|
| ID | 4602700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 549686 |
|---|
| End bp | 551893 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639779781 |
|---|
| Product | primosomal protein N' |
|---|
| Protein accession | YP_926325 |
|---|
| Protein GI | 119773585 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCTGA TTATGCCACA GTTTGTTGAA GTTGCTCTGC CGGTTCCCAT GCGCCGCAGT
TACAGCTATC GATTGCCAGC ACAACCAAGC ACTTCACCCT GCCCCGGCAA AAGGGTCAAG
GTGCCCTTTG GCAAACAACA ACTGATAGGT CTTATTACCG CAACCAAAGA CAGTTGCGAG
CTGCCCGATG CCCAAATCAA AGAAATCATT GAGATAATCG ATGATGAGCC GGCATTGTCT
GAACCACTCT ATAAACTGAC TCTGTGGGCC GCAAGGTATT ATTTTTGCAG TCAGGGACAG
ATGCTGACCC AGGCATTGCC GGTGGCACTG CGCAAAGGCG CGGATGCCGC CCCCAAGAGT
CGCACCTGGC TTAAATTGAC CGACAAGGCC AGAGAGGCCG GCATCACCAC CCTGAAGCGG
GCACCAGCCC AACAAAAGCT CGCCGAAATG CTGTGGCAGC ATCCCCTGAG TCTGGATGAA
TTCAACGCCA TGGAGCTCAG CAAGGCCGCC CTGAAAGGTC TCGAAGACAA GGATTGGGTA
CAGCGGGAAC AGGTGCCGGT AGACATTAAC CTCGGCTGGC GAACAGCGCT TGAGCTTGGT
GAAACGCCCC ATAAGCTCAA CAAGGAACAA GCTGTGGCAG TCGCTGCCAT CAACGCCGCC
GAGGGGTACG CGTGCGCACT GCTTGAGGGC ATCACGGGCT CAGGTAAAAC AGAGGTGTAC
CTTTCGGTAT TGGAAAAGAT ACTGAGCGAA GGCAAACAGG CGCTGATTTT GGTGCCTGAG
ATAGGCCTGA CGCCCCAGAC CATTGACCGC TTCCGTCGCC GCTTCAAGGT TGAAGTGGCG
GTAATCCATT CCAACCTCAC CGACAATCAA CGCCTCGATG CCTGGCGTGC AGGGCGCAGC
GGCGAAGCTG CCATCATTAT CGGTACCCGC AGCGCCTTAT TCACGCCCAT GGCGTTCCCC
GGCATTATCA TCCTCGACGA AGAGCACGAC AGCTCGTTCA AACAGCAGGA AGGTGTGGGC
TACCACGCCC GCGATCTGGC GGTGATGCGT GGCCATCTGG AGAATATTCC CGTGGTACTG
GGCTCGGCCA CACCCTCGCT GGAGTCGCTT CAAAACGCCC TCTCGGGCCG TTATCGGCAC
CTGCATCTGG GGGAGCGCGC CGGTAACGCC AAAAAAGTAC GTCAGGGCAT TATCGATATC
CGCAACCAAC CGCTGAAGGC TGGTATGTCG GCGGCGCTGC TCAACGAAAT GCGGCTGCAT
CTGGATGCCG GCAATCAGGT GCTGCTGTTT TTGAATCGCC GCGGCTTTGC TCCGGCGCTC
CTGTGTCACG AGTGCGGCCA TTTGCATGAG TGCGATCGCT GCGATGCCTT TTTTACCGTG
CATCAAAAGC TTGGCGAAAT TCGCTGCCAC CACTGCGGCA ACCAATATGC CATTCCGCGC
CAGTGCCACA ACTGCGGCTC CACCATGCTG ATGGGCCAGG GGATAGGCAC AGAGCAGCTG
GAACAAGTGC TGAAAGAAGA GTTCCCCAAA TATCCTGTGG TACGCATCGA CAGAGACACC
ACCCGCCTCA AGGGCTCACT GGAAAATCAC CTGCAGGCCA TTCATCGAGG CGACTACAAA
ATCCTGGTGG GCACCCAGAT GCTGGCCAAA GGCCACCACT TCCCGGACGT GACTCTGGTG
GGTCTGTTGG ATGTGGATGG TGCCCTGTTC AGCGCCGATT TTCGAGCGCC GGAACGCTTT
GGCCAACTTT ACACCCAGGT GGCCGGTCGT GCGGGCCGCG CCGCCAAACC CGGCACTGTG
CTGCTGCAAA CTCACCAGAG CGATAACCCG ATATTACGGG AGCTGATGCA TAAGGGTTAT
GGCGATTTTG CCCGCGGCCA GCTCAGTGAG CGCAAACAGG CGGCACTGCC ACCGGCGTGG
CACATGGTGC TGGCACGGGC CGAAGCCCAC AGGGCTGAAG ATGCCGAAGC CTTTTTGGCA
GCCATCGCGG CCATGTTGCC AAGGGACAGG GGATTTGAAG TGATTGGGCC CCTGCCCGCG
CCCATGGACC GCAAGGCTGG CAAGCACCGA CGCCAGCTGA TGTTTCAGGC CGAGCAGCGT
CAGGGATTAC AGCAGGCATT GGAAGCGATT CTGCCCGCCA TCGATCTTCT GCCCGAGGCA
AAGCGTTGTC GGTGGAGCCT GGACAGAGAT CCGCAGGACC TGCTCTAA
|
|---|
| Protein sequence | MYLIMPQFVE VALPVPMRRS YSYRLPAQPS TSPCPGKRVK VPFGKQQLIG LITATKDSCE
LPDAQIKEII EIIDDEPALS EPLYKLTLWA ARYYFCSQGQ MLTQALPVAL RKGADAAPKS
RTWLKLTDKA REAGITTLKR APAQQKLAEM LWQHPLSLDE FNAMELSKAA LKGLEDKDWV
QREQVPVDIN LGWRTALELG ETPHKLNKEQ AVAVAAINAA EGYACALLEG ITGSGKTEVY
LSVLEKILSE GKQALILVPE IGLTPQTIDR FRRRFKVEVA VIHSNLTDNQ RLDAWRAGRS
GEAAIIIGTR SALFTPMAFP GIIILDEEHD SSFKQQEGVG YHARDLAVMR GHLENIPVVL
GSATPSLESL QNALSGRYRH LHLGERAGNA KKVRQGIIDI RNQPLKAGMS AALLNEMRLH
LDAGNQVLLF LNRRGFAPAL LCHECGHLHE CDRCDAFFTV HQKLGEIRCH HCGNQYAIPR
QCHNCGSTML MGQGIGTEQL EQVLKEEFPK YPVVRIDRDT TRLKGSLENH LQAIHRGDYK
ILVGTQMLAK GHHFPDVTLV GLLDVDGALF SADFRAPERF GQLYTQVAGR AGRAAKPGTV
LLQTHQSDNP ILRELMHKGY GDFARGQLSE RKQAALPPAW HMVLARAEAH RAEDAEAFLA
AIAAMLPRDR GFEVIGPLPA PMDRKAGKHR RQLMFQAEQR QGLQQALEAI LPAIDLLPEA
KRCRWSLDRD PQDLL
|
|---|
| |