| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0401 |
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| Symbol | |
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| ID | 4602656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 498804 |
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| End bp | 499745 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779737 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_926281 |
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| Protein GI | 119773541 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0930057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTGA ATCGCGTGCA GATATTTGCG GCCGTGGTGG AGCATGGCAG CTTTACCGCC
GCAGCCACCG CACTGGGGAT CACCAAAGCC ACGGTGAGCC GTAAAGTCGC CGAGCTTGAA
GAAAACGCCG GTGTCCAGCT GCTGTTTCGC ACCACCCGCG CGCTCAAGTT AACTGAAGCG
GGCAGTAACT ATTACCACAG GGTAAGCCGT GTGCTGTCGG AGCTGCAGCA GGCCGAAACC
CAGCTGAGCG CCAGTCAGCA AAATATCCGC GGCAAGTTGA AAATTGTCTG CCCCATAGAA
CTGGGGCAGT TGTTTCTTGG CAGTATTCTC GCCCGCTTTT TAAAGCAATA TCCCGATATC
CAAATCAATA CCGAACTCAC CAATCGCCGG GTCGACGTGA TTGAAGAAGA TATCGATATG
TTGTTTCAAA TCGCCGAACC CAAGGATCCT CGCCTCACCT GCCATGCCAT GGTAAAGGCA
GACAAGATGC TGCTTGCCTC CCCCGAATAT CTGGCACAAT TCGGCACACC AAAGACACCG
GCCGATTTGG CACACCACAG GGCTATTCGG CTGGTATCGG CCCATATCGA CGGCGTCTGG
AAGATATTTG ATGGTAAACA GTGGCAGGTT TACGAACCCG TGGCCCAGCT CACCGTCAAT
AATGTCACCC TGGCAAGGGA GGCCGCCATC GAGGGCTTGG GCATAGCGAC CGTGCCAACC
CTCATCGCCA GCGAGGCCCT CGCCTCAGGT AAACTGGTCC CGGTGCTGGA AGACTATCCC
ATGCATCAGG CGAAAATTAC CCTCAGCTAT CCGCAAAGTG CATATTTACC AAGACGATAC
CGGGTATTTA TCGCGTTTAT TTATCAGCAC CTGGTTGCCC AGTTCGGTGA TCAGGTGCTT
GAAATACCTG ACTTCATTAA CATCAATTCA TCTCAGGTTT AA
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| Protein sequence | MDLNRVQIFA AVVEHGSFTA AATALGITKA TVSRKVAELE ENAGVQLLFR TTRALKLTEA
GSNYYHRVSR VLSELQQAET QLSASQQNIR GKLKIVCPIE LGQLFLGSIL ARFLKQYPDI
QINTELTNRR VDVIEEDIDM LFQIAEPKDP RLTCHAMVKA DKMLLASPEY LAQFGTPKTP
ADLAHHRAIR LVSAHIDGVW KIFDGKQWQV YEPVAQLTVN NVTLAREAAI EGLGIATVPT
LIASEALASG KLVPVLEDYP MHQAKITLSY PQSAYLPRRY RVFIAFIYQH LVAQFGDQVL
EIPDFININS SQV
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