| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0276 |
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| Symbol | |
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| ID | 4602532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 318764 |
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| End bp | 321673 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 639779605 |
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| Product | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein |
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| Protein accession | YP_926157 |
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| Protein GI | 119773417 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.264842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGTAT TAAATAAAGG CTCAAAAGGG AGTTTCAGTC GGCTGCTTAA ACTGGCTGTA
ATGACTGGTG TTGAAAGTGC AGTGAAAGCA CAGCTGGATA ACATCAGTGC TTTGAATGCA
CAGGATCAAA ATGGCGCTAC TCTTCTCATT CTTGCCGTAC AAAAAGGACA CGAAAATATC
TGTCGCTTGC TTCTTCAAGA AGGAGCGGAT CCGGAGATAG AGGACAAGAC TGGGAAAAAG
GCTAAAAATT ATGCCGAAGA GAATGGTGAT GACAGAATTG TCCACTTGCT GAATGAACGA
TCATTTTTCG TACCGGCCTT AAGGTCTCAA AATGAATATC ATACAAAGGA TGAAAGGCTC
AGCAAACCGG TTGCCTGTCC CGGTGAAATT TATAAGGCTG ATAAGAGTGA GTCTGATTCT
GAGATAAATA TTGTTACTAA TGTTGGTGAT GCTAAAAACG ATATTGTGGT TACTTGCCTT
AGAAGCGAAA TCGTGGGGAC TAGCTTAACT GAACCAGCCG GCTCATCTGA AGAAAGCGTT
CCTTCATCCG CAATACTTCC GGTAGCCGTT AATGCTGCCA AGCCCCCCGT CCTAAATGTT
GAGCAAAGCA AAATCTTTGG GTCAGTTGAG AATATAAGTG CGGATGGCAA AAATGAGGGC
TCGACATGGG AACTCGATGG GAGTTGTCCA GCGTTATCTG CTTTGGATGA CGCTCAGACA
GAAAAGTTAG AACTCACAAT GCCTCTGCCA TTAGGGAAAA AAATTGCCGA GCGAGAAAAA
AGCTTGCAGA CTGTTATACA GGCCCAATCT AAAGTTGATG ATTTACCTTG TTTGATCCTT
AGCCAGCAGC AACTGAAAAA CGATAAAGAA GAGCTGTATG GATGGGAACT TGCCTGCGAA
GATATGCCTC CCGAGGAAAA CCTTGAAAGT AAGGTTCAAG CTTCTGCAAT ACAGTTACAA
ATCACCAGTC ACATCCCGAT CGATTCTGGG GAAGGTTGGT CGGACATAGC TATAGATCTA
CCTGAGTTTT TGGATCATCC AGATCTAGAA CTTTTCAGGA AAAAGTGGGT TTTTGAGGGG
TTCAGTAAAC TTTTCGAGTC ATGCGCCCAC GTAGGTACTT TGTCGGAAAC CTTTCTGAAC
GACTATGTGG CTGAACTGTA CACAGACCAA ATATTAAAGA GTTCCCATGC ATATCAAGTA
TCTAGGCCGA CGGATTTTTC TAAAGTCCTG CAGAATGATG CTTTTTATGA GCAGTTATAC
ACCCAACTGG CAGAGAAGGT TTTTTATATC CGTCAAGTGC TGGAAGTGCA TGGCTGCGTG
ATCGACGATC ATACGTTTGA AGGGGAGTCT CTTGCTGATA GCGTCTATGA AGACCATGAT
GCAGCCTCCA TTGATGATGC GATGCTGCTA CTTGATGATC TTCTTTATGC CAGAGATGAG
CCCATGGGCT ACTACTTCGC AAGTCTTCCC GGTAAAGAAC TGTTGACCAG GGAGCAGGAA
GTGGATAACG GCATGCGCAG AGAAGCAGCC AGATTAGCCA TTATGGAGGC ATTGTCTGAA
GTGCCTTTTA TTTGCGAGCT TTTGGCACAT CTCTGCCAAG AAGCTCTCAG AGAACATAAT
CCTGAACAGT CACTTCAAAA AGTTGTTGCT GAGCTGAACA CCCTCCCAAG TGAGGATTTC
GTCGAGATAA AGAGGGCTGT CTCCTTGTTT ATGGATGAAC AAGAAGATGG CGATGAACCC
GATGATTTTG TTGATACATA TCCCTATGAG GCAATTGTTG GAGCCCTTAA AACTTTCCTC
AATGTATCTG GTGAGTCCGA ACACCCGGGA GTACAGGATA CGTTCAGGAG CATTGTCCTC
ACCGAGGATG CCCTGAATAT ATTGATTAAA GCGTTGTACG AGTCAATTGA TAAGGTTAGC
GACATAAAAA CAGAACTGGT CAATCTTTAC ACCCGCGAAA TCAAGCTTCC ACGTAAGACA
GCAGAGAGTG TTGCAGAGCA AAAAATGGGT CGAGAACTGA TATCTCAACT TAAAACAGAA
TATCCTCTTT GCGAAGACAA ACTTGAACGG CATGCCGGTG CAATTAATCG TTTGCAGGCT
CAGATGCAGA ATATTAACCA AAAGACAGGT ATTGATTTAT ATAGTCTTCA GGATATCGGT
TCCAAGATAA AAAAATTGCA GCGAGATATA AGTGCTGCTA GGGATGAGAT GATTACCTTC
AACCTAAGAT TGGTGCTTTC GGTTGCCAAT AAATACCTAG GTAGGGGACT TGAACTTGCA
GATCTGGTGC AGGAAGGAAA CATTGGTTTG ATGAAGGCTG TTGAAAAATT TGACCACAGG
AAAGGTTTTA AATTCTCAAC CTATGCCACT TGGTGGATAC GGCAGGCTAT TACAAGGGCT
ATTGCTGATC AAGCACGAAT TATACGCATA CCTGTTCATG TCAATGAGAG CCTCAATAAG
CTGATATCTG CAAGCAAAGT ATTGACTCAC AAGTTTGGAA GGGGGCCAAA GATATCTGAA
TTGTCATTGA TACTCAGCAT GCCTGAAACC AAAGTAGAAA ACTTGAAACA GATTTTAGTC
ATGGAGCCCG TAGCTGAGGC CGATCACAAC ACGAACGGTT ATGTAGATTG GGCTGCAATG
TCTCCTGAAG AAGAAATTAT TGATGATGAT CGAGACACTA ATATAAAAGA TCTGCTGAAG
GGGCTGACAG ATAAAGAGAA AAAGGTGCTG GAACTTCGTT TTGGAATTAA TGCTGCTACT
GAGCTCACTC TAGAAGAAGT CGGCCAGCAG TTTGATGTTA CTCGTGAACG CATCAGGCAG
ATTGAAGCGA AAAGTTTGAA GAAGCTCGCT CATACATCTC GTTCAAGCCA CCTTGCAATA
TTTTTTGGAA AAGAACCGGT GGCAGATTAA
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| Protein sequence | MRVLNKGSKG SFSRLLKLAV MTGVESAVKA QLDNISALNA QDQNGATLLI LAVQKGHENI
CRLLLQEGAD PEIEDKTGKK AKNYAEENGD DRIVHLLNER SFFVPALRSQ NEYHTKDERL
SKPVACPGEI YKADKSESDS EINIVTNVGD AKNDIVVTCL RSEIVGTSLT EPAGSSEESV
PSSAILPVAV NAAKPPVLNV EQSKIFGSVE NISADGKNEG STWELDGSCP ALSALDDAQT
EKLELTMPLP LGKKIAEREK SLQTVIQAQS KVDDLPCLIL SQQQLKNDKE ELYGWELACE
DMPPEENLES KVQASAIQLQ ITSHIPIDSG EGWSDIAIDL PEFLDHPDLE LFRKKWVFEG
FSKLFESCAH VGTLSETFLN DYVAELYTDQ ILKSSHAYQV SRPTDFSKVL QNDAFYEQLY
TQLAEKVFYI RQVLEVHGCV IDDHTFEGES LADSVYEDHD AASIDDAMLL LDDLLYARDE
PMGYYFASLP GKELLTREQE VDNGMRREAA RLAIMEALSE VPFICELLAH LCQEALREHN
PEQSLQKVVA ELNTLPSEDF VEIKRAVSLF MDEQEDGDEP DDFVDTYPYE AIVGALKTFL
NVSGESEHPG VQDTFRSIVL TEDALNILIK ALYESIDKVS DIKTELVNLY TREIKLPRKT
AESVAEQKMG RELISQLKTE YPLCEDKLER HAGAINRLQA QMQNINQKTG IDLYSLQDIG
SKIKKLQRDI SAARDEMITF NLRLVLSVAN KYLGRGLELA DLVQEGNIGL MKAVEKFDHR
KGFKFSTYAT WWIRQAITRA IADQARIIRI PVHVNESLNK LISASKVLTH KFGRGPKISE
LSLILSMPET KVENLKQILV MEPVAEADHN TNGYVDWAAM SPEEEIIDDD RDTNIKDLLK
GLTDKEKKVL ELRFGINAAT ELTLEEVGQQ FDVTRERIRQ IEAKSLKKLA HTSRSSHLAI
FFGKEPVAD
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