| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0274 |
|---|
| Symbol | |
|---|
| ID | 4602530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 315340 |
|---|
| End bp | 316263 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639779603 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_926155 |
|---|
| Protein GI | 119773415 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAATC CCCTCTGGCT AAAAACCTTT ATCACCCTGG TGGAAACCGG CCACTTTACC
CAAACGGCAA GCAAGCTGTT TATGACCCAG CCCGGGGTAA GCCAACACCT GAATAAGCTG
GAGCAGGCCT GTGGCCACCA GCTGCTTATC CGCAGCCGCA GTGGCATCGA ATTGACCGAA
GCGGGCGAGC GACTGTATCA GTATGCGCTC TCTCAGGCCC GGGCCGAGGC GGCGCTGCTG
GATAGCCTGG ATGAGGACAA TCCTTTCAGC GGCAGCTGTC GTCTCGCCTG CTCCGGCTCG
CTGGCGCAGC TGCTCTACCC CAAGCTGTTG GCGCTGCAAG CAGCGCATCC GGGGCTTAAG
GTGCATATGG AGGCCGCGCC CAATGCCCGC ATCATCAACG AGGTGCAGCA AGGCGATAAG
GACCTTGGCA TTATCACGGC GCCGCCGCCG AGGGGGCTGT TCAGTGACAC TGACATAGGC
ACCCAGGCGC TGTGTTTGGT GTTACCGGCA AGCAGCGAAG CCACCACAGA TGACGCCAGT
CTCCCTTCAA TAAACGAACT CAAAGTCCTT GGGCTGATAA GCCACCCGGA TGCCGCCCAT
TATCTGTCGC TGTTTTTTGC CCACAGTGGC AGCCCCGGCT ACCAAAATGC CTTCGCCGAA
GACTTTCCCA TCAGCAGTTA CATTAATCAG TTGGGGCAAA TCCTGTTGCC TGTATCCATG
GGACTGGGCT TTACCGTGCT GCCACTGTCG GTGGTCGAGC AATTCAGCGA GCGGGACAAA
CTCAGGGTGT GTGTTGGGCT GGAGCGGGTA TTCGAGCCAC TGTATCTCAT CCATAAACGC
CAGCGGCAAC TGCCCGCCCG ATTTGATACT ATTCGCAGCC TGATCCAATC CGTGCTGACA
AGCACAACTG ACAGCCCCCA ATGA
|
|---|
| Protein sequence | MLNPLWLKTF ITLVETGHFT QTASKLFMTQ PGVSQHLNKL EQACGHQLLI RSRSGIELTE
AGERLYQYAL SQARAEAALL DSLDEDNPFS GSCRLACSGS LAQLLYPKLL ALQAAHPGLK
VHMEAAPNAR IINEVQQGDK DLGIITAPPP RGLFSDTDIG TQALCLVLPA SSEATTDDAS
LPSINELKVL GLISHPDAAH YLSLFFAHSG SPGYQNAFAE DFPISSYINQ LGQILLPVSM
GLGFTVLPLS VVEQFSERDK LRVCVGLERV FEPLYLIHKR QRQLPARFDT IRSLIQSVLT
STTDSPQ
|
|---|
| |