| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0139 |
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| Symbol | |
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| ID | 4602396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 156138 |
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| End bp | 157208 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639779451 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_926021 |
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| Protein GI | 119773281 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTATT TTAAATCTCC CCTGCTGGCA TTGGCGCTGA TTATGGGCGG TCAGGTGCTG
GCAGCTGATG AGCGTTCCGT CGGCGTGGCC ACAGTGGAAC AGCGCCCCCT GTCACCCAAA
CTCATGGTGG TGGGCACTGT GCACAGCCGC AGCCTGGCAC AGCTGACCAC GGGTGTAGCC
GGTAAACTGG AGTGGGTGCA GGAAGCGGGC ACCCGGGTCA GCGCAGGTGA GGTGGTTGCC
AGGCTGGATG CGACGCCATT AACCCTGCAA CTGGCCGAAC AACAGGCGCT GGTCAATCGG
GAAGAAATCG CTCTGGCACG CCTTGAGCGA AACCTGACCC GGCTGGAACG CCTGGCGGCC
AGCCAAAGCA TTTCCCGCAC AGAAATCGAC GATACCCGCT CCGAGCGGGA TCTGGCCAAA
AGCAGCCTGG AGCTTGCCAG GGTCAGGCTG GATATCATCC GCGATAATCT GGCTCGCACC
CAACTCAAGG CCCCCTTTGG CGGCATTGTT ATCTCACGCA GCCATCAGGC CGGTGAAGAT
GTGGGCCCCG CCGAGCCGGT ACTAACCATC ACAGACCCCG ACCATCTGGA AATAAGACTC
CATGCCCCAC TGAAACACAG TCGCAGGGTG AATATCGGGG ACGAGCTCAA GGTGTATCAC
AGCAACGGTG AATTCAGCGC CCGCATCCGT ACCCTGATAC CCGTGTCGGA TGTACGCAGC
CAAACCTTTG AAGCCCGCCT CGACCTGCCA CAGGCCATGG CACGGGAAAT CAACATAGGT
GAACTGGTGT CCATGGCCCT GCCGATAGCA CCGGCCACCT TAACCACCTT GGTGCCAAGA
GACGCGTTGG TACTGCGCTC CAGTGGCGCC AGTGTGTTTC GGGTTACCCC CGAGCAGACC
GCTGAGCGTA TTCCCGTGAC CCTGGGCGAC GGTGAAGGCC CCTGGATAGC GGTGCGGGGC
GAACTTAACG CCGGAGATAC CCTGGTCATC CGCGGCGCAG AAACCCTGAC CGACGGCATG
AAACTCACCG TACAGCAAGC CGCAGCCCAA GCCACTGCCA GCGCCAAATA G
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| Protein sequence | MTYFKSPLLA LALIMGGQVL AADERSVGVA TVEQRPLSPK LMVVGTVHSR SLAQLTTGVA
GKLEWVQEAG TRVSAGEVVA RLDATPLTLQ LAEQQALVNR EEIALARLER NLTRLERLAA
SQSISRTEID DTRSERDLAK SSLELARVRL DIIRDNLART QLKAPFGGIV ISRSHQAGED
VGPAEPVLTI TDPDHLEIRL HAPLKHSRRV NIGDELKVYH SNGEFSARIR TLIPVSDVRS
QTFEARLDLP QAMAREINIG ELVSMALPIA PATLTTLVPR DALVLRSSGA SVFRVTPEQT
AERIPVTLGD GEGPWIAVRG ELNAGDTLVI RGAETLTDGM KLTVQQAAAQ ATASAK
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