Gene Sama_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0022 
Symbol 
ID4602279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp20486 
End bp21418 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content59% 
IMG OID639779331 
ProductUrea carboxylase 
Protein accessionYP_925904 
Protein GI119773164 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1984] Allophanate hydrolase subunit 2 
TIGRFAM ID[TIGR00724] biotin-dependent carboxylase uncharacterized domain 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00319916 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTTGAAG TGGTAATGGC GGGCATTCAA ACCACGGTGC AGGATCTCGG CCGAACCGGC 
GTGGCGCATC TTGGACTGCC ACGCAGTGGC GCGCTGGACC GTCAGGCCCT GCTGCTCGCC
AACCGGCTGC TGGGTAACCC AGATAATACG CCTGTGCTGG AGTTTGCTCT GGGCCAATCG
AGCCTCCGAT TTCATCGCGA TGCCTGGATT GCCCTAACTG GTGCCGATTT CGACGCAAGA
ATCGATGCCA AGCCCGTTTG GTGCGGATGG CGCAGCCTGA TCAAAGCCGG ACAAACCCTC
AGCCTACGCG GCCCCAAGGC GGGCATGCGA GCCTACTTGG CAGTAGATGG CGGTGTACAG
GTGCCACCGT TTATGGGCTC GGCCAGTACC GATTTATCCA GTGGTGTTGG CGGCCTTGAA
GGCCGCTCCC TTAAGTCTGG GGATCGCCTC GAGCTGGGAA CAGAGAAACC GCTGAAGCAT
CCGGTGGGCG CGATGCAACC TTCCTGGGAT AACCTGCTAA GGGTACTGAC AGGACCGCAA
TATCCCTTAC TCAGCGACAC ATCAACACTA ACAAAGGCGA TGTGGCGCGT TCAGCCAAGC
AGCAATCGCA TGGGTGCGAG ACTGGAGGGA CCTGCGCTGC ATTTAAGTAA GCCGCTGGAG
ATGGCATCCC AGGGTGTGTT CCCCGGGGTC ATTCAACTGC CACCATCAGG ACAACCCATA
GTACTGCTGA ACGACGCCCA AACAACCGGC GGTTATCCCA TTATCGCCAC AGTGATTGAA
GCCGACCTGT GGAAACTTGC TCAGGCACGC CCCGGGCAAC CGCTGCAATT TGTCTTGGTC
GACCGCGCCG AAGCACGGGC CGCTTGCGAG CGTTGGAATC AATATTTTTA TCGCCTCGGC
CGAGCTCTTG GCAACGGAGA AGCCCATGTC TAG
 
Protein sequence
MLEVVMAGIQ TTVQDLGRTG VAHLGLPRSG ALDRQALLLA NRLLGNPDNT PVLEFALGQS 
SLRFHRDAWI ALTGADFDAR IDAKPVWCGW RSLIKAGQTL SLRGPKAGMR AYLAVDGGVQ
VPPFMGSAST DLSSGVGGLE GRSLKSGDRL ELGTEKPLKH PVGAMQPSWD NLLRVLTGPQ
YPLLSDTSTL TKAMWRVQPS SNRMGARLEG PALHLSKPLE MASQGVFPGV IQLPPSGQPI
VLLNDAQTTG GYPIIATVIE ADLWKLAQAR PGQPLQFVLV DRAEARAACE RWNQYFYRLG
RALGNGEAHV