| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4185 |
|---|
| Symbol | |
|---|
| ID | 4596699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4424170 |
|---|
| End bp | 4425591 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639778791 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_925369 |
|---|
| Protein GI | 119718404 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3944] Capsular polysaccharide biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGCTGA AGGACTACTG GCTGGCGATG CGCCATCGGT GGCGCGTCGT CGTCGCCATC
GTCACGCTCA GCGTGGGAGC CGCGGCCCTG CTCACGTGGC AAGCCACCCC GCAGTACTCC
TCGACCGCGA GCATCTTCGT CTCGACCAGC CCGTCGGACA CCGCCGACGC CTACCAGGGC
AATCTGTTCG CCACCCAGCG GGTGAGCTCC TACGCCGAGC TGGTCGGCAA GCACAAGCTC
GCGGAGCAGG TCGCCAACGA CCTCGGCAAC GGGATGGACC CCGAGACTCT CCAGGCGGCG
GTGTCCACGT CGGTGAACCC CGACACGGTC ATCCTCGAGA TCAGCGCCAC CGATCCCGAC
CCGGTCATCG CCCGTGACAT CGCGCAGGCG TACGCCCAGG CGCTGAGCGA CGAGGTCGCC
TCGCTCGAGA CGCCCGCCGG CAAGACGGAC GCGCTGATCC ATGCGTCGAT CGTTGACAAC
GCCCGGGTCT CGGACACTCC GGTGAGCCCG CAGCCGGTGC GCAACATCGG CCTGGCGCTG
GTTCTCGGCC TGCTGCTCGG TGTCGGCGCC GCCGTGCTGC GCGAGCTCCT CGACACGTCG
CTGTCGTCCA GCGAAGACAT CGCAGAGGTG ACTCCGGCGC CCGTACTCGG CCGGATCACC
GCGGACAACA CCGCGGTGCG CCGTCCACCC GCCGAGGTCC TCACCGATGC GACGCCGTGG
TCGGAGTCGT TCCGGGTGCT GCGCACGAAC ATGCAGTACG TCGAGGTCGA CCATGACCAG
AAGGTGTTCG TGGTCAGCAG CTCGCTGCCG AACGAGGGCA AGACGACCAC GGCCGTCAAC
CTCGCGATCA CCTTGGCGCT CGCCAAGCAG CGGGTCGTGC TCGTCGAGTG CGACCTGCGA
CGCCCGCTGA TCGCCAGCCG GCTGGGCCTC GACGCCGGCG TCGGCACGAC CAGCGTGCTG
ATCGGCAAGG TGCACCTGCG CGACGCCATG CAGCAGTACG CCGACACCGG CCTGTGGGTC
CTCTCCAGCG GACCGATCCC GCCGAACCCG TCGGAGCTGC TCCAGTCCAA CGCCATGGAG
AAGCTCGTGG GCGAGCTCCG CGACGACTTC GACATCGTGA TCCTGGACGC CCCGCCGCTG
CTCCCGGTCA CCGATGCAGC TCTGCTCGCC GCCCAGGCCG ACGGTGCACT CGTGGTCGTG
CGCCACGGCA AGACGACCCG CGACCAGCTC GGCCACGCGA TCGAGCGGGT CGAGGCGGTC
GGCGGCAAGG CCGTCGGCGT CGTCGTCAAC CTCGCGCCGA CGATCAAGAA GGGCCGCTCG
TACGGCTACG GGTATGGCTA CGGCTACTAC GGCTACACCA GCCGCCCCGC GCCGACCCCG
TCGGCGAAGC ACGACCGCCG GCGTGCCCGC CGCACCCGCT GA
|
|---|
| Protein sequence | MELKDYWLAM RHRWRVVVAI VTLSVGAAAL LTWQATPQYS STASIFVSTS PSDTADAYQG
NLFATQRVSS YAELVGKHKL AEQVANDLGN GMDPETLQAA VSTSVNPDTV ILEISATDPD
PVIARDIAQA YAQALSDEVA SLETPAGKTD ALIHASIVDN ARVSDTPVSP QPVRNIGLAL
VLGLLLGVGA AVLRELLDTS LSSSEDIAEV TPAPVLGRIT ADNTAVRRPP AEVLTDATPW
SESFRVLRTN MQYVEVDHDQ KVFVVSSSLP NEGKTTTAVN LAITLALAKQ RVVLVECDLR
RPLIASRLGL DAGVGTTSVL IGKVHLRDAM QQYADTGLWV LSSGPIPPNP SELLQSNAME
KLVGELRDDF DIVILDAPPL LPVTDAALLA AQADGALVVV RHGKTTRDQL GHAIERVEAV
GGKAVGVVVN LAPTIKKGRS YGYGYGYGYY GYTSRPAPTP SAKHDRRRAR RTR
|
|---|
| |