| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4004 |
|---|
| Symbol | gabD2 |
|---|
| ID | 4598139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4225593 |
|---|
| End bp | 4227152 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639778609 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_925188 |
|---|
| Protein GI | 119718223 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCC AGCGACCGGC GTCGATCACC GACGCGTTCC TCGAGCGGCT CGTGGCCCGC
GTGCCGTCGA CCAGCGGCGG CACCTGGAAG CTCACCGAGG TCTACACCGG TGACCTGCTC
GTGGAGCTCC CGCAGTCGAC ACCCGCCGAC ATCGAGGCGG CGTTCGCGGC GGCGCGCGCG
GCCCAGCGCT CGTGGGCGGC CCGACCGCTC AAGGAGCGGC TCGAGGTGTT CAAGCGCGCG
CACGCCCTGT TCCTCGACAA CGCCCACACC ACGACCGACC TGATCCAGGT CGAGAGCGGC
AAGAACCGGC GGATGGCCAT CGAGGAGACC TGCGACCCGG TGATGGTGAT GAGCCACTAC
CTCAAGCGGG CCCCGCACCT CCTCAAGCCG GTCAAGCGCG GCGGGCCGAT CCCGTTCTTG
TCCAGCTCGA CCGAGATCCG CCAGCCCAAG GGCGTCGTCG GGATCATCGC GCCGTGGAAC
TTCCCGTTCG CGACCGGCAT CTCCGACTCG ATCCCGGCGC TGATGGCCGG CAACGCGATC
GTGCTCAAGC CGGACAACAA GACGGCGCTC TCGCCGCTGT ACGGCGTGCA GATGCTCGAG
GAGGCCGGCC TGCCGAAGGG GCTCTTCCAG GTGGTCTGCG GCGAGGGCCC GGACGTCGGC
CCGACGCTGA TCGACAACGC CAACTACGTG ATGTTCACCG GCTCGACCGC GACCGGTCGG
GTGATCGGGG AGCGGGCCGG GCGCAACCTA ATCGGCTGCT GCCTCGAGCT CGGCGGCAAG
AACCCGATGA TCGTGCTCGA GGACGCGGAC CTCGACGAGG TCGTGCAGGG CGCGATCTTC
GGCGCGTTCG GCAACACCGG CCAGATCTGC ATGCACATCG AGCGGATGTA CCTGCCCGCG
TCGAGGTACG ACGAGTTCCG CTCGCGGTTC GTCGCTGCGA CCGAGGCGCT GACCATCGGC
GCGGCGTACG ACTTCGGCCC CGACATGGGC TCGCTGGTCT CGCCGGACCA CATGGAGCGG
GTCCGGGGGC ACGTCGACGA CGCCGTGGCC AAGGGCGCCA CCGTGCTCAC CGGCGGCCGG
TCACGGCCCG ACCTCGGCCC GGCCTTCTTC GAGCCGACCA TCCTGGAGGG CGTCACCCAG
GACATGCTCT GCGGCGTCAC CGAGACCTTC GGCCCGGTCG TCGCGCTGCA CCGGTACGCG
ACCGTCGACG AGGCGATCGC ACTCGCGAAC GACACCGACT ACGGGCTGAA CGCCTCGGTG
TGGGGCGGCG ACATCGCCAG CGCCTGCCAG GTCGGCCAGC GGATCGAGAC GGGCAACGTG
AACGTCAACG ACATCCTCGC GACGGCGTAC GCGTCCAAGG GCACGCCCTC GGGCGGCGTC
AAGCAGTCCG GCGTGGGCGC CCGGCACGGC GACCAGGGCC TGCTGAAGTA CACCGACGTG
CAGAACCTCG CCGTCTTGAA GAAGCAGGTG ATGGGCGCGC GGCCCGGCCA GGACTACGAG
AAGTACGTCA AGGGGATGCT CAGCGGCCTG CGGATGATGC GCAAGACCGG CATCCGCTAG
|
|---|
| Protein sequence | MALQRPASIT DAFLERLVAR VPSTSGGTWK LTEVYTGDLL VELPQSTPAD IEAAFAAARA
AQRSWAARPL KERLEVFKRA HALFLDNAHT TTDLIQVESG KNRRMAIEET CDPVMVMSHY
LKRAPHLLKP VKRGGPIPFL SSSTEIRQPK GVVGIIAPWN FPFATGISDS IPALMAGNAI
VLKPDNKTAL SPLYGVQMLE EAGLPKGLFQ VVCGEGPDVG PTLIDNANYV MFTGSTATGR
VIGERAGRNL IGCCLELGGK NPMIVLEDAD LDEVVQGAIF GAFGNTGQIC MHIERMYLPA
SRYDEFRSRF VAATEALTIG AAYDFGPDMG SLVSPDHMER VRGHVDDAVA KGATVLTGGR
SRPDLGPAFF EPTILEGVTQ DMLCGVTETF GPVVALHRYA TVDEAIALAN DTDYGLNASV
WGGDIASACQ VGQRIETGNV NVNDILATAY ASKGTPSGGV KQSGVGARHG DQGLLKYTDV
QNLAVLKKQV MGARPGQDYE KYVKGMLSGL RMMRKTGIR
|
|---|
| |