| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3997 |
|---|
| Symbol | |
|---|
| ID | 4598132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4218066 |
|---|
| End bp | 4219616 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639778602 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_925181 |
|---|
| Protein GI | 119718216 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.167245 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CAGCGACGGA CCGCGACGAG GCCATGGGGC CTGACCAGGC CCTGGGCCGT
GACGACGCCC TGGCCCGGCT CCGGGCGATG CAGGCCGCCG ACCTGCCGGT ACACGGCGGC
CGCACCCTGG CCTACGTCTA CGACTCGGGC CTGCCCGACG TCGACCGGAT CGGCCGCGCG
GCGGTCGCCG CGTACGCCGG CTCCAACGGC CTGGACCCGA CCGCGTTCCC GAGCCTGCTG
CAGATGGAGA ACGAGCTCGT CGGCTTCGCC GCCGACCTGC TCGACGCCCC GGGCACGTGC
GTGGGCACCG TGACCTCGGG CGGCACCGAG TCGGTGCTGC TCGCCGTGCA GGGCGCGCGC
GACAGCCGCC CCGACCTCGC GCGGCCGCGG ATGGTGCTGC CCGCCACCGC GCACGCGGCC
TTCCACAAGG CCGCGCACTA CTTCGGCGTG GAGGCCGTGC TGGTGCCGGT CGGACCGGAC
TTCCGCGCCG ACCCGGCCGC GATGGCCGCC GCGATCGACG AGGACCCCGA CCGCACCGTG
CTCGTGGTGG CGTCGGCGCC GTCGTACGCC CACGGCGTCG TCGACCCGGT CACGGAGGTG
GCGGCAGCGG CCGCGGCCCG TGGCATCCGG TGCCACGTGG ACGCGTGCAT CGGCGGCTGG
GTGCTGCCCT ACGCGACGCG CCTGGGCCGG TCGGTGCCGG CGTGGACGTT CGCGGTCGAG
GGCGTCACCT CGATCTCGGT GGACCTGCAC AAGTACGGCT ACGCCCCGAA GGGCACGTCC
GTGCTGCTGC ACCGCACGGC CGGGCTGCGG CGTCCGCAGT ACTTCGCCTC CGCGGCGTGG
CCGGGCTACA CGATGCTGAA CTCCACCCTG CAGTCGACCA AGTCGGGCGG ACCCCTGGCC
GGCGCCTGGG CGGTCGTGCA GTCGCTGGGT GACACGGGGT ACGAGCTCCT CTCCCGAGAG
ACCTTCGAAG CCGTCGACGC GATCGTGGCA GGGCTCGCCG ACATCCCGGC GCTCGTCCTC
GCGGCCGTCC CCGACTCGAC GCTGGTCGCG ATCGCGACCG ACGACAGCTG CGACGCGTTC
ACGGTGTGCG ACGAGATGGC GACCCGCGGG TGGTACGTCC AGCCGCAGCT GTCGTATGCC
GGGCACCCGC CGACCATCCA CCTCTCGGTG AGCGCAGCGA CCAACGCCCA CGTCGACGAC
TTCCTCGCGG CACTGGCCGC CTCGGTGGCA GCCGCGCAGG CGGCCGGGCC GGTGTCGGTG
GACCCCGGGA TCGCGGAGTT CATCGGCGCC CTCGACCCGG CGACGCTCTC GGACGCGGAC
TTCGACGGCC TGCTCGCCGC CGCAGGCCTG GTGGGCGGCG ACGCCGCGGC GGGCCTCGAC
CTCCCCGAGC GGATGGCCGA GGTCAACGCG ATGCTCGACC TCGCGTCCCC CGCGATGCGC
GAGGCGCTGC TCGTCGCGTT CCTGGACCGG CTGGCCCGGC CCCGGCGGCA GGGCCAGGGT
CAGCGGGTGG CGGTCGACCC GGCGAAGGCC AGCACCGAGT CCAGCGAGTA G
|
|---|
| Protein sequence | MSDAATDRDE AMGPDQALGR DDALARLRAM QAADLPVHGG RTLAYVYDSG LPDVDRIGRA
AVAAYAGSNG LDPTAFPSLL QMENELVGFA ADLLDAPGTC VGTVTSGGTE SVLLAVQGAR
DSRPDLARPR MVLPATAHAA FHKAAHYFGV EAVLVPVGPD FRADPAAMAA AIDEDPDRTV
LVVASAPSYA HGVVDPVTEV AAAAAARGIR CHVDACIGGW VLPYATRLGR SVPAWTFAVE
GVTSISVDLH KYGYAPKGTS VLLHRTAGLR RPQYFASAAW PGYTMLNSTL QSTKSGGPLA
GAWAVVQSLG DTGYELLSRE TFEAVDAIVA GLADIPALVL AAVPDSTLVA IATDDSCDAF
TVCDEMATRG WYVQPQLSYA GHPPTIHLSV SAATNAHVDD FLAALAASVA AAQAAGPVSV
DPGIAEFIGA LDPATLSDAD FDGLLAAAGL VGGDAAAGLD LPERMAEVNA MLDLASPAMR
EALLVAFLDR LARPRRQGQG QRVAVDPAKA STESSE
|
|---|
| |