| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3966 |
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| Symbol | |
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| ID | 4598101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 4179789 |
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| End bp | 4183016 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639778571 |
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| Product | major facilitator transporter |
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| Protein accession | YP_925150 |
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| Protein GI | 119718185 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGTACAG GTGGACGTGG GATGGTCGGT CGGTCACCAG GAGCCGCCGC CCCCGCCGCC
GCCTCCGCCG CCACCCGAGA ACCCGCCGCC GCCCGAGGAC GACGACTTCT GGGTGGCCTC
GTAGGAGGAG ATCGCGGAGC TGACGGTGGA GTGGAAGTCG TCGACCATCG ACGAGGCCAC
CGAGCCGGTG TAGGCGCCCG CGTACGCGGG ACCGAGGTAC GACGGGACCG GCGGCTCGGC
GCCCATCTCG GTGCGGTACT TGCCCGCCCA CTCCTCGGCG CACCCGAACG CCACCGCCCA
GGGCACGTAG GCGGTGTAGA ACTCCTCGCG TCCGGAGAAG TCGAACCGGT CCTGTGCGGA
CGGCGTCGCC AGGATCCGGC GGAACCCGCC GGCCCGCGAC CAGAGGTCGC GGCCGGCCTT
GGTGCGCCGG GTGCCCGCGC CGGAGGCCGC GAGGGAGGCG CCGAAGACCC CGAAGGCGCC
CGGCACCAGC CCCACGATCG ACATGTTCAG CGGGTTCCAG ATCGCGATCG CGACCACCGC
GGCGAGGCAG AGGCCGATGA CCACTCCGCC ACCGCCGCCC AGCCCGCTCC TGACCATCAG
GCCGGAGGTG GCGGCCCAGG TCCGGGTGCT CTCCTCGAAC GACTCGATCT CGGTCTTGAG
CCGCTGACCG GCCGCGACGT CCTTGGGCGC GGCGACGAAC GAGGTGCCCG GGCCGCCGAG
CAGGTGTGCC ACCCCACTGG TCACGGGATC GAGGCCGGCC CAGCCCGCTG CGCCGTTCTT
GTCCGAGATC GTCCACGTGC CGTCGGCGCG GTCCAGGTCG ACGGCACCCT TCTCGGCGGC
GTACATGAGG GTGGCGACGT ACTGCTCGTC GTCGACCTCC TCGGTGACCA GGTAGGCGGC
CTGGGCGGGG CCGATGCCGT CCGGCGGCGC GTACATCACC GGGAACTGCG GGTCCTTCTC
CCTGGCCCGC CGGGCCAGGT GGAAGCCGTA GCCGCCGGCC GCGGCGGCCA GGACGAGCAC
GACGGCCAGC GCGGCCAGGT TGGGCCCGAG CACGGCGTCC AGCGCCGGGC CCCAGGGTCG
CTCGTCGCCG GGCGGAGGCG TTGCCAGGTC CAGGCCCACC TTGACCGTCA CGGGGGTGCG
CGGGTCGAGC GACGTCGCCC GGATCCGCAG GTCCGCGGTG CCCTCCCCTC GGAGCCGGCA
GCCCGTCTCG TCGGAGCCGA CGGCGCACTG GACCCGCTCG GCCGCGGCGG GCAGGTGGAC
CGTGAGGTCG GCCGAGTCGA TGCGCTGGGC CCAGCCGCTG GGGATCAGGT TCCAGTAGAG
CTGGGTGCGG GAGCCGTTGG TGCCCGGCTC CAGGATGCCG GCGATGTCGT AGCGGATCTC
GTACACGTGC TCGCCGGGCT CGACGGTCGA GTCCGGATCG CCGATGCGGG CGACCTTGAA
CTGGCCACCG CCCTCGTAGG ACGTCTCGAC CGGGACGTCG GCACCGTCCA TCGTGACCTC
GATGCCGCGG GGGATCCGGC GGACGGTGTC CGGGGCCGTC TGGTCGTGGG TGTCCCAGAA
CCGGAAGATC CCGTGCTTGC CGGGGAACGG GAAGTCGACC GTGAGGGTCT CGACGGCCGT
CAGGTCGCCC TGGTCGTCCA CGTCGAAGTC CGCGACGTAC GACGTGATCG TGGTCTCGTC
CGACTCGGCG GGTCCCTCGT CGCCGCTCAC CCCGTAGAGC GCCGCGGGGA GCATCAGCAC
CAGCACCACG ACCGCCAGGC CGACCACGGT CCCCACCACA CGCTTCATGG CCCGGAGCCT
AGGGGGCGAC GGGACAGCCG CGTCGGAAAA CCGCGTGCCG GGTGTCGCCG GCCGCTGGGA
GACTGCTCGG CGATGAGCTC GCCGACCCGC CCCGACGCCG ACCGCCCGAC CCTCGCCTCC
TTCTGGCACG ACCTGCCCCG CGAGGGCCGG CTGCTGCTCT CGGTCGTGGT CTTCGAGTTC
ATCGGCACCG GCCTGGTGCT GCCCTTCCAC GTCGTCTACC TGCACGAGGT GCGCGGCTTC
GCGCTCAGCG ACGTCGGGCT GCTGCTCGCG CTCCCGCCCC TGATCGGCTT CCTCGTCGTC
GGGCCCGGCG GTACCGCGAT CGACCGGCTC GGCGCGCGCC GGATCCTGAT CGGCGCGCTG
GTCCTCCAGA CCGTCGCGAA CGTCACACTC GCGTTCTCGG CGGCGGAGTG GATGGCGGCG
GGGGGGCTGA TGCTCTCCGG CGCGGCGTTC GGGGTGTCGT GGCCGGGGTT CCAGGCCTTC
ATCGCCGCGG TGGTCCCGGT CGAGCTGCGG CAGCGCTACT TCGGCGTGAA CTTCACGCTG
CTCAACCTCG GCATCGGGAT CGGCGGCATC GTCGGCGGCG CGTTCGTCGA CGTGGACCGG
CTGGTCACCT TCCAGGTCAT CTACCTCGGC GACGCGATCA GCTACCTCCC CGCCCTGGTC
CTCCTGCTCT GGCCGCTGCG GCTGGTCGCC GGTCGGCCGG TCCACGAGGG CGGCGCCCCG
CCGGCGACGG TGAGCTACCG CGAGGTGATG CGTCGGCCCG CGGTCGCCTC GCTGATGCTG
CTCAGCTTCG TGTCGTCGTA CGTCGGCTAC TCCCAGCTCA ACGCCGGGAT GCCGGCGTTC
GCGCGCGCGG TGGGCGAGGT CTCGACGCAG GGCCTCGGGC TGGCGTTCGC CGCGAACACC
GTGGTGATCG TCGTGCTCCA GCTGGTCGTG CTCCAGCGGA TCGAGGGGCG GCGCCGCACC
CGGGTGATCG CGGTGATGTC GGTGGTCTGG GCGTGCTCCT GGGTGCTGCT CGGCGCCACC
GGGCTGGTCT CCGGCACGTG GGGCGCGACG CTCCTGGTCG CCGGCTGCGC GTCGGTGTTC
GCGTTCGGCG AGACCCTGCT GCAGCCGACC GTCCCCGCCC TCGTCAACGA GCTGGCCCCC
GACCACCTGC GGGGGCGCTA CAACGCGCTC AGCTCCGGGT CCTTCCAGCT CGCCGCGATC
ATCGCACCGC CGGTCGCCGG CTACCTCGTC GGCCACGGCC TGGGCAGCGT CTACATCGGC
TCGCTCGTCG TCGGCTGCCT GCTCTGCGGC GCGCTGGCGG TCCTGCGGGT CGAGCCACAG
CTGAGCCCCG AGGTCAACGG TGTGCGAGCT CCGGCGCAGG TCACCACGGC CGCGGACGTC
ACCGTCCCCG TGCCGACGGC CAAGACCCAG TCCAGCGCCC TGGACTAG
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| Protein sequence | MGTGGRGMVG RSPGAAAPAA ASAATREPAA ARGRRLLGGL VGGDRGADGG VEVVDHRRGH
RAGVGARVRG TEVRRDRRLG AHLGAVLARP LLGAPERHRP GHVGGVELLA SGEVEPVLCG
RRRQDPAEPA GPRPEVAAGL GAPGARAGGR EGGAEDPEGA RHQPHDRHVQ RVPDRDRDHR
GEAEADDHSA TAAQPAPDHQ AGGGGPGPGA LLERLDLGLE PLTGRDVLGR GDERGARAAE
QVCHPTGHGI EAGPARCAVL VRDRPRAVGA VQVDGTLLGG VHEGGDVLLV VDLLGDQVGG
LGGADAVRRR VHHRELRVLL PGPPGQVEAV AAGRGGQDEH DGQRGQVGPE HGVQRRAPGS
LVAGRRRCQV QAHLDRHGGA RVERRRPDPQ VRGALPSEPA ARLVGADGAL DPLGRGGQVD
REVGRVDALG PAAGDQVPVE LGAGAVGARL QDAGDVVADL VHVLAGLDGR VRIADAGDLE
LATALVGRLD RDVGTVHRDL DAAGDPADGV RGRLVVGVPE PEDPVLAGER EVDREGLDGR
QVALVVHVEV RDVRRDRGLV RLGGSLVAAH PVERRGEHQH QHHDRQADHG PHHTLHGPEP
RGRRDSRVGK PRAGCRRPLG DCSAMSSPTR PDADRPTLAS FWHDLPREGR LLLSVVVFEF
IGTGLVLPFH VVYLHEVRGF ALSDVGLLLA LPPLIGFLVV GPGGTAIDRL GARRILIGAL
VLQTVANVTL AFSAAEWMAA GGLMLSGAAF GVSWPGFQAF IAAVVPVELR QRYFGVNFTL
LNLGIGIGGI VGGAFVDVDR LVTFQVIYLG DAISYLPALV LLLWPLRLVA GRPVHEGGAP
PATVSYREVM RRPAVASLML LSFVSSYVGY SQLNAGMPAF ARAVGEVSTQ GLGLAFAANT
VVIVVLQLVV LQRIEGRRRT RVIAVMSVVW ACSWVLLGAT GLVSGTWGAT LLVAGCASVF
AFGETLLQPT VPALVNELAP DHLRGRYNAL SSGSFQLAAI IAPPVAGYLV GHGLGSVYIG
SLVVGCLLCG ALAVLRVEPQ LSPEVNGVRA PAQVTTAADV TVPVPTAKTQ SSALD
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