| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3947 |
|---|
| Symbol | |
|---|
| ID | 4598082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4157563 |
|---|
| End bp | 4159203 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639778552 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_925131 |
|---|
| Protein GI | 119718166 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACGACG GCCCCCTGAT CGTCCAGTCG GACAAGACGC TGCTGCTCGA GGTCGACCAC
GAGCGCGCCG CCGACTGCCG CAAGGCGATC GCGCCGTTCG CGGAGCTCGA GCGCTCCCCC
GAGCACGTCC ACACCTACCG GCTGACGCCG CTGGGCCTCT GGAACGCCCG CGCCGCCGGG
CACGACGCCG AGCAGGTCGT CGACACGCTG CTGGAGTACA GCCGATACGC CGTACCGCAC
GCGTTGCTGG TCGACGTCGC CGAGACGATG GCGCGCTACG GCCGGCTGAG GCTGGAGAAG
CACCCCGTCC ACGGGCTGGT GCTGGTCAGC ACCGACCGGC CGGTGCTCGA GGAGGTGCTG
CGCGCGAAGA AGGTCGCGGG GATGCTCGGC GCGCGCATCG ACGAGGACAC GGTCGTCGTG
CACGCCTCCG AGCGGGGCAA CCTCAAGCAG GCGCTGCTCA AGCTCGGCTG GCCGGCGGAG
GACTACGCGG GGTACGTCGA CGGCGAGGCC CACCCGATCG CGCTCGACGA GACCGCGTGG
CACCTGCGCG CCTACCAGCG CGAGGCGGCC GAGTCGTTCT GGCACGGCGG CTCCGGGGTC
GTCGTCCTCC CCTGCGGGGC CGGCAAGACG CTGGTCGGTG CGGCCGCCAT GGCCGAGGCG
CAGGCGACCA CGCTGATCCT GGTCACCAAC ACCGTGTCGG CGCGGCAGTG GAAGGACGAG
CTGGTCCGGC GTACCTCCCT GACGCCAGCC GAGATCGGCG AGTACTCCGG GGCGGTCAAG
GAGATCCGGC CGGTCACCAT CGCGACGTAC CAGGTGATGA CGACCAAGCG GAAGGGCGTC
TACCCCCATC TCGAGCTGCT CGACGCCCGG GACTGGGGGC TGATCGTCTA CGACGAGGTG
CACCTGCTGC CGGCGCCGAT CTTCCGGATG ACCGCGAACC TGCAGGCCCG GCGCCGGCTC
GGCCTGACCG CGACCCTGGT GCGCGAGGAC GGCCGCGAGG GCGACGTGTT CTCGCTGATC
GGGCCGAAGC GGTACGACGC GCCCTGGAAG GACATCGAGG CGCAGGGCTG GATCGCCCCT
GCCGACTGCG TCGAGGTGCG GGTCACGCTG CCCTCGGGCG AGCGGCTGGC GTACGCGACC
GCGGAGCCCG AGGAGCGCTA TCGGCTCGCG TCCTGCACCC ACCACAAGAT CGACGTCGTC
GAGTCACTGG TCGCAGCCCA CCCGGGCCAG CCGACGCTGG TGATCGGTCA GTACATCGAG
CAGCTCGACG AGCTGGCTCT GGCCCTCGAC GCGCCGGTGA TCAAGGGCGA GACGAAGGTC
GCCGAGCGGC AGCGGCTGTT CGACGCCTTC CGGCACGGCG AGATCGGGCT GCTGGTCGTC
TCCAAGGTCG CGAACTTCTC CATCGACCTG CCCTCCGCCG AGGTCGCGAT CCAGGTCTCC
GGATCCTTCG GCTCCCGCCA GGAGGAGGCC CAGCGCCTGG GCCGGCTGCT GCGGCCCAAG
ACCGAGGGTC GCACCGCGCA CTTCTACACG ATCGTGTCCC GCGACACCGT CGACGCCGAG
TTCGCCCAGA ACCGGCAGCG CTTCCTCGCC GAGCAGGGCT ACGCCTACCG GATCGTGGAT
GCGGAGGACC TGCCGGCGTA G
|
|---|
| Protein sequence | MNDGPLIVQS DKTLLLEVDH ERAADCRKAI APFAELERSP EHVHTYRLTP LGLWNARAAG
HDAEQVVDTL LEYSRYAVPH ALLVDVAETM ARYGRLRLEK HPVHGLVLVS TDRPVLEEVL
RAKKVAGMLG ARIDEDTVVV HASERGNLKQ ALLKLGWPAE DYAGYVDGEA HPIALDETAW
HLRAYQREAA ESFWHGGSGV VVLPCGAGKT LVGAAAMAEA QATTLILVTN TVSARQWKDE
LVRRTSLTPA EIGEYSGAVK EIRPVTIATY QVMTTKRKGV YPHLELLDAR DWGLIVYDEV
HLLPAPIFRM TANLQARRRL GLTATLVRED GREGDVFSLI GPKRYDAPWK DIEAQGWIAP
ADCVEVRVTL PSGERLAYAT AEPEERYRLA SCTHHKIDVV ESLVAAHPGQ PTLVIGQYIE
QLDELALALD APVIKGETKV AERQRLFDAF RHGEIGLLVV SKVANFSIDL PSAEVAIQVS
GSFGSRQEEA QRLGRLLRPK TEGRTAHFYT IVSRDTVDAE FAQNRQRFLA EQGYAYRIVD
AEDLPA
|
|---|
| |