| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3753 |
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| Symbol | rumB |
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| ID | 4598615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 3971620 |
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| End bp | 3972759 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639778361 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_924940 |
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| Protein GI | 119717975 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTGCT CCCACTTCGA CGCCGGACGC TGCCGGTCCT GCACCTGGCT CGGCACGGCG
TACGCCGCGC AGCTGGGCGC CAAGCAGCAC ACCGTCGAGG AGCTGCTCGC CCGGTCGGTC
GGCGCCGCCG GGGCGACGGC CTGGCTGCCG CCGGTCGCCA GCGCCCAGCT GGGCGTGCGC
AACAAGGCGA AGATGGTGGT CAGCGGCACC CTCGCGGAGC CGACGCTCGG CATCCTGAAC
CCGGCCGGCG CCGGGGTGGA CCTGCGCGAC TGCCCGCTGC ACACGCCGGG CATCCAGGCA
GCGCTCCCGG TGCTCGCCGA CTTCGTGACC CGGGCCGCGC TGGCGCCGTA CGACCTGGCC
ACTCGCAGGG GTGAGCTGAA GTACCTGCTG GTCACCGAGT CACCGGACGG TGAGCTGATG
GTGCGGTTCG TGCTGCGCTC CCAGGAGCCG GTGGCGCGGA TCCGCAAGCA CCTGCCCGCG
CTGCTCGAGC GGCTGCCGCA GGTCGCGGTC GCGACCGTGA ACCTCCAGCC CGAGCACAAG
GCGGTCCTGG AGGGCGAGCG CGAGATCGTG CTCACCGAGC AGGAGTCGCT GCTGATGCAG
GTCGGCGGCC TCGGGCTGCA CCTGCGGCCG CAGAGCTTCT TCCAGACCAA CACCGCGATG
GCCGCCGAGC TCTACCGGCT CGCCCGCGCG TGGACGGCCG AGCTGGCCCC GGGCCGGGTC
TGGGACCTGT ACTGCGGGGT GGGCGGCTTC GCCCTCGCGA TCGCGTCCAC GGCGCACGCG
GAGGTCACCG GCGTCGAGGT CAGCGGCGAG GCGATCGCCT CGGCGACCGC CAGCGCGCGG
GAGGCGGGGC TCGACCGCGT GCGGTTCGAG GCCGGCGACG CCACCGCCTG GGTGTCGGAC
CGGCCCGACG TCCCGGACCT GGTCGTCGTG AACCCGCCGC GACGGGGCCT CGGCCCCGAG
CTCAGCGGCT GGCTCGAGGA CTCGGGCGTG CGGCACGTCC TGTACTCCAG CTGCAACGCC
CACACGCTGG CCCGCGACCT GGACGCGATG CCCTCGCTGC GCCCGGTGCG CGCGCAGCTG
CTCGACATGT TCCCGAACAC CGCGCACTAC GAGGTCCTCG CGCTGCTGGA GCGGTTGTGA
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| Protein sequence | MLCSHFDAGR CRSCTWLGTA YAAQLGAKQH TVEELLARSV GAAGATAWLP PVASAQLGVR
NKAKMVVSGT LAEPTLGILN PAGAGVDLRD CPLHTPGIQA ALPVLADFVT RAALAPYDLA
TRRGELKYLL VTESPDGELM VRFVLRSQEP VARIRKHLPA LLERLPQVAV ATVNLQPEHK
AVLEGEREIV LTEQESLLMQ VGGLGLHLRP QSFFQTNTAM AAELYRLARA WTAELAPGRV
WDLYCGVGGF ALAIASTAHA EVTGVEVSGE AIASATASAR EAGLDRVRFE AGDATAWVSD
RPDVPDLVVV NPPRRGLGPE LSGWLEDSGV RHVLYSSCNA HTLARDLDAM PSLRPVRAQL
LDMFPNTAHY EVLALLERL
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