Gene Noca_3606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_3606 
Symbol 
ID4599409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp3823558 
End bp3824247 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content73% 
IMG OID639778214 
Productregulatory protein, LuxR 
Protein accessionYP_924793 
Protein GI119717828 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.527821 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAGC AGCACCCGGC GTCCCGCGCC GGGGGACCGG CGGCGATCGT GATCGTCGAC 
GACCACGCCA TGTTCCGGCG CGGAGTGCGC GCCGAGCTCG AGAGCGCCGG CCGCGGGCTG
GTCCGGGTGC TCGCCGAGGC CGCCGACGTG GACGAGGCGG TGGCGGCGGT CTCGACCCAC
CGCCCCGACG TGGTGCTGCT CGACGTCCAC CTGCCCGGGG GCGGTGGGGC CGAGGTGATG
CGCAGGGTGA CGGCCTCGCA CGCCTCCCCG GACACCCGCT ACCTCGCCCT GTCGGTCAGC
GATGCCGCCG AGGACGTCAT CGGGACCATC CGCGGCGGGG CGCGCGGCTA CGTCACCAAG
ACCATCACCG GTCCCGAGCT GGTCCAGGCG ATCGGCCGGG TCGCCGAGGG CGACGCCGTC
TTCTCGCCCC GGCTGGCCGG CTTCGTCCTG GACGCGTTCT CCGGCTCGAT CGACGTCGCC
GCGGTGGACG AGGACCTCGA CCGGCTCACC GAGCGCGAGC GGGAGGTGAT GCGCCTGATC
GCCCGCGGCT ACGCCTACAA GGAGGTCGCG AAGGAGCTGT TCATCTCGAT CAAGACCGTC
GAGACCCACA TGTCCAGCGT GCTGCGCAAG CTCCAGCTCT CCTCGCGCCA CGAGCTCACC
CGCTGGGCCT CCGACCGCCG GCTGCTCTAG
 
Protein sequence
MSEQHPASRA GGPAAIVIVD DHAMFRRGVR AELESAGRGL VRVLAEAADV DEAVAAVSTH 
RPDVVLLDVH LPGGGGAEVM RRVTASHASP DTRYLALSVS DAAEDVIGTI RGGARGYVTK
TITGPELVQA IGRVAEGDAV FSPRLAGFVL DAFSGSIDVA AVDEDLDRLT EREREVMRLI
ARGYAYKEVA KELFISIKTV ETHMSSVLRK LQLSSRHELT RWASDRRLL