Gene Noca_3556 details

Gene Information

• Locus tag: Noca_3556
• ID: 4599435
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 3771803
• End bp: 3772342
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639778164
• Product: 2',5' RNA ligase
• Protein accession: YP_924743
• Protein GI: 119717778
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1514] 2'-5' RNA ligase
• TIGRFAM ID: [TIGR02258] 2'-5' RNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.267626
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGACGA TTGGCGTAGC GCTCGCGATC CCGGAGCCCT GGGCCTCTGA GCTGCAGGAC 
TACCGGAAGG CCGTCGGCGA CCACACCGCC GCGATGATCC CCACCCACAT CACGCTGGTC 
CCGCCGACCG AGATCGACCC GGGCCAGGCG GCGGAGGTCG AGAGGCATCT CGAGGACGTC 
GCCGCGGGTG CCGACCCGTT CCGGGTGCAC CTGCGCGGCA CCGGCACCTT CCGACCGGTC 
TCACCGGTGG TCTTCGTGAC CCTGGTGGAG GGCATCTCTC GCTGCGAGCA GCTCGCCAAG 
GCCCTGCGCC GGGGACCGCT CGACGCGGAG CTGCAGTACC CCTACCACCC GCACGTGACC 
ATCGCCCATC ACCTCGGCGA CGACCTGCTG GACCAGGCCT TCGAGGAGCT CGCCGGGTTC 
GAGTGCCAGT TCGAGGCCGA GCGCTTCCAC CTCTACGTGC ACGACGACCG GACCGGCTGG 
CGACCCACTC GCGATTTCCC TCTCCAGGCT GGCAACCAAA CGCCTCCGCG CGGCGTCTGA 

 

Protein sequence

MSTIGVALAI PEPWASELQD YRKAVGDHTA AMIPTHITLV PPTEIDPGQA AEVERHLEDV 
AAGADPFRVH LRGTGTFRPV SPVVFVTLVE GISRCEQLAK ALRRGPLDAE LQYPYHPHVT 
IAHHLGDDLL DQAFEELAGF ECQFEAERFH LYVHDDRTGW RPTRDFPLQA GNQTPPRGV