| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3128 |
|---|
| Symbol | |
|---|
| ID | 4595558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 3330957 |
|---|
| End bp | 3332762 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639777734 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_924317 |
|---|
| Protein GI | 119717352 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCC GTGTCGGAGA GGCCGGCTCC CGCTGGGAGT CGCAGCGCAG CTTCGACGAG
CTCGGCCGCC CGCTGCGCGA CATCACCTTC TGCGTGGTCG ACCTGGAGAC CACCGGTGGC
TCGGCCGAGG GCGGCGCGAT GATCACCGAG ATCGGCGCCG TCAAGGTGCG CGGCGGCGAG
GTCCTCGGCG AGTTCCAGAC GCTGGTCAAC CCGCGCACCG AGATCCCGGC GTTCATCGCC
GTCCTCACCG GCATCAGCAA CTCGATGGTC GCCGACGCGC CCCCGGTCGA GGCCGCCCTC
CCGGCGTTCC TGGAGTTCGC CGCCGGCAGC GTCCTGGTCG CCCACAACGC GCCCTTCGAC
GTCGGCTTCC TGCGCTACTT CGCCGAGCAG CAGGGCCGGC CGTGGCCCGG CTTCGAGGTG
GTCGACACCG CCCGCCTCGC GCGGCGGGTG GTCAGCCGCG ACGACGCCCC CAACTGCAAG
CTGTCCTCCC TGGCGAAGGC GTTCGGCTCC ACGACCACGC CCAACCACCG CGCGCTGTCC
GACGCCCGGG CGACCGTCGA CGTGCTGCAC GGGCTGATGG AGCGGCTCGG CGGCGTCGGC
GTGCACACGC TCGAGGAGCT CCAGACCTTC TCCTCCCGGG TCAGCTCCGC CCAGCGGCGC
AAGCGGCACC TGGCCGAGGG TCTCCCCCAC GCCCCGGGTG TGTACCTGTT CCGCGACGAG
CAGGCCCAGG TGCTCTACGT CGGCACCTCC CGCGACCTGC GCACCCGCGT CCGGTCCTAC
TTCACCGCCT CCGAGACCCG GTCCCGGATG GGCGAGATGG TCGGCATCGC CACCGTGGTC
GACGCCATCG AGTGCGCCAC CGCGCTCGAG GCCGAGGTCC GCGAGCTTCG GCTGATCGCC
GAGCACAAGC CGAAGTACAA CCGGCGCTCG CGCAACCCCT CGAAGGTCCA CTTCATCAAG
CTCACCCGGG AGCCCTGGCC GCGGCTCTCG CTGGTGCGCC GGGTGCTCGA CGACGACGCC
GACTACCTCG GTCCGTTCTC GTCGAAGAAG ACGGCCGAGA AGTGCCTGGC CGCGCTGCAC
GAGACGTTCC CCGTCCGGCA GTGCACCGAC CGGCTGCCCG GCGACCCGGC CGCCGCCGGA
CGCGCGCCGT GCGTGCTGGC CGAGATGGGC CGCTGCCTGG CCCCGTGCGA CGGCAGCGTC
GACCACGCGA CGTACGCCGC CGTCGTCCAC CAGCTGCGCG ACACGCTGCT GCGCCGCCCC
GACGAGGTCG TCGAGACGAT CAACGCCAAG ATGGGGGCGC TGGCCGCCGA CGAACGGTTC
GAGGAGGCCG GCGTCCATCG CGACAGGCTG GCCGCCTTCG TCCGCGCCGC CGCGCGGACC
CAGCGACTCT CCGCGCTCAC CCGCTGCCCC GAGGTGGTCG CCGCCCGCCG CGAGGACGAC
CCGACCGGAC CGGGCGGCCG GTGGGCGGTG CACGTCGTGC GCCACGGCCG GCTGGCCGCG
GCCGGGGTGA TCCCGGCCGG CGCCGACGCG CACGCGTACG TCGCCACCCT GCGCCTGTCC
GCCGAGACGG TCGCCGCGGC GCCGGGCCCG GTGCCCGCGG CGAGCGCCGA GGAGACCGAG
AGGATCCTGC GGTGGCTGGA GTCCCCGGGG ATCCGCCTCG TCGACGTGGA CGGCGAGTGG
AGCTGCCCGG TGGCCGGCGC GACCCGCCAC CTCGCGATCC ACGACTCGGC CAACCAGTCA
CGGCTGTCGC TGGTGCCGTT CGCCGAGCGG CGGGTGCTCA CCACCATGCA TCAGCCGGTG
CGCTGA
|
|---|
| Protein sequence | MSSRVGEAGS RWESQRSFDE LGRPLRDITF CVVDLETTGG SAEGGAMITE IGAVKVRGGE
VLGEFQTLVN PRTEIPAFIA VLTGISNSMV ADAPPVEAAL PAFLEFAAGS VLVAHNAPFD
VGFLRYFAEQ QGRPWPGFEV VDTARLARRV VSRDDAPNCK LSSLAKAFGS TTTPNHRALS
DARATVDVLH GLMERLGGVG VHTLEELQTF SSRVSSAQRR KRHLAEGLPH APGVYLFRDE
QAQVLYVGTS RDLRTRVRSY FTASETRSRM GEMVGIATVV DAIECATALE AEVRELRLIA
EHKPKYNRRS RNPSKVHFIK LTREPWPRLS LVRRVLDDDA DYLGPFSSKK TAEKCLAALH
ETFPVRQCTD RLPGDPAAAG RAPCVLAEMG RCLAPCDGSV DHATYAAVVH QLRDTLLRRP
DEVVETINAK MGALAADERF EEAGVHRDRL AAFVRAAART QRLSALTRCP EVVAARREDD
PTGPGGRWAV HVVRHGRLAA AGVIPAGADA HAYVATLRLS AETVAAAPGP VPAASAEETE
RILRWLESPG IRLVDVDGEW SCPVAGATRH LAIHDSANQS RLSLVPFAER RVLTTMHQPV
R
|
|---|
| |