| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3054 |
|---|
| Symbol | |
|---|
| ID | 4600171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3252670 |
|---|
| End bp | 3253521 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639777660 |
|---|
| Product | zinc finger, DksA/TraR C4-type |
|---|
| Protein accession | YP_924243 |
|---|
| Protein GI | 119717278 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.523661 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCA CCACGAGGAA GTCGCTCGCC GGACACGCGG CCTCTGCCGC CCGCAAGGTG
ATGCCGCGCC GGCCGGCGAA GAAGGCTGCG ACCGAGTCGA CTCCGGGAGC CACGACGGCG
AAGAAGAACG GCACGGCGGC GAAGGCGGCG CCCGCCAAGA AGGCGGCGCC CGCGAAGAAG
GCCGCGCCCG CGAAGAAGGC GGCACCCGCG AAGAAGGCCG CGCCCGCGAA GAAGGCGGCA
CCCGCGAAGA AGGCCGCGCC CGCGAAGAAG GCGGCACCCG CGAAGAAGGC GGCACCCGCG
AAGAAGGCGG CACCCGCGAA GAAGGCGGCA CCCGCCAAGA AGGCGGCACC CGCCAAGAAG
GCGGCACCCG CCAAGAAAGC GGCACCCGCC AAGAAGGCGA CGCCCGCCAA GAAGGCGGCA
CCCGCCAAGA AGGCGGCACC GGCGAAGAAG GTGTCGCCCA GCGCACTCGT GGTCAAGGAG
GGCGAGGCCG CCTGGACCAA GGCCGAGCTC AAGGAGGTGC TCGACGAGCT GCACGAACAG
CGCGAGCACA GCCAGCGGAT CATCGAGGCC CAGGAAGCCG AGCTCGACGG CCTGATGCGC
GACTCCGGTG ACGGAGCCGG TCAGGACCAG GCGGACCTCG GGGCGACCAG CTTCGAGCGC
GACCACGAGC TGACCGTCCT CAACAGCGAG CGGGACAAGC TGGCCCAGAT CGAGCGGGCC
CTGGCGCGCA TCGACGACGG CACGTACGGC GTGTGCGAGT CCTGCGGCAA CCCGATCGGC
AAGATGCGGC TCATGGCGTT CCCGCGTGCC ACACTGTGCA TGACATGCAA GCAGCGCGAG
GAACGTCGCT GA
|
|---|
| Protein sequence | MARTTRKSLA GHAASAARKV MPRRPAKKAA TESTPGATTA KKNGTAAKAA PAKKAAPAKK
AAPAKKAAPA KKAAPAKKAA PAKKAAPAKK AAPAKKAAPA KKAAPAKKAA PAKKAAPAKK
AAPAKKAAPA KKATPAKKAA PAKKAAPAKK VSPSALVVKE GEAAWTKAEL KEVLDELHEQ
REHSQRIIEA QEAELDGLMR DSGDGAGQDQ ADLGATSFER DHELTVLNSE RDKLAQIERA
LARIDDGTYG VCESCGNPIG KMRLMAFPRA TLCMTCKQRE ERR
|
|---|
| |