| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3052 |
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| Symbol | |
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| ID | 4600169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 3251166 |
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| End bp | 3252104 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639777658 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_924241 |
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| Protein GI | 119717276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.159413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCCGCG ACGCCGACCA TCGGGTGCTC TCGGTGCCCG AGGGCCTCGC GGGGGAGCGG
GTCGACGCGG CCCTGGCGCG GATGTTCGGC CTCTCGCGCA CCCGCGGCGC CGAGCTGATC
GCCGCCGGGA ACGTGCTCGT CGACGGAGCG CCGGTCGGCA AGAGCGACCG GGTGCTGCCG
GGCTCGACCG TGGCCGTGAC CATCCCCGTC GAGGCCGACC CGCTCGCGGT CGTCCCCGAG
GTCGTCGAGG GGATCAAGAT CCTGCACGAC GACGACGACA TCGTGGTGAT CGACAAGCCC
GTCGGCGTCG CCGTGCACCC CTCGCCGGGC TGGTCCGGCC CCACCGTGGT CGGCCACCTT
GCCGGCGCCG GCTTCCGCAT CTCCACCAGC GGCGCCCCCG AACGGCAGGG GATCGTCCAG
CGCTTGGACG TCGGAACCTC GGGCGTGATG GTGATCTGCA AGTCCGAGCA CGCCTACTCG
GTGCTCAAGA ACGCGTTCCG GCGCCGCACC GTCGACAAGG TCTACCACGC GCTGGTGCAG
GGCCACCCGG ACCCGCTCGA GGGCACCATC GACGCTCCGA TCGGGCGGCA CCCCAAGGCC
GACTACAAGT TCGCGGTGAT GGCCGACGGG CGGCACAGCG TCACGCACTA CGAGACGCTC
GAGGCGCACC GGTTCGCCAG CCTGTTGGAG ATCCACCTCG AGACCGGCCG CACCCACCAG
ATCCGGGTGC ACATGGCGGC GCTCAAGCAC CCGTGTGTCG GTGACCCCAC GTACGGCGCC
GACCCCAGCC TGGCGCGCCG GGTCGGGTTG GAGCGGCAGT GGCTGCACGC CGTACGCCTC
GGCTTCGAGC ATCCCGAGAC CGGCAAGCAG GTCGAGTACG AGTCGGAGTA CCCGGAGGAC
CTCGCGCACG CGCTCGAGGT GATCCGCGAT GCGCACTAG
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| Protein sequence | MSRDADHRVL SVPEGLAGER VDAALARMFG LSRTRGAELI AAGNVLVDGA PVGKSDRVLP
GSTVAVTIPV EADPLAVVPE VVEGIKILHD DDDIVVIDKP VGVAVHPSPG WSGPTVVGHL
AGAGFRISTS GAPERQGIVQ RLDVGTSGVM VICKSEHAYS VLKNAFRRRT VDKVYHALVQ
GHPDPLEGTI DAPIGRHPKA DYKFAVMADG RHSVTHYETL EAHRFASLLE IHLETGRTHQ
IRVHMAALKH PCVGDPTYGA DPSLARRVGL ERQWLHAVRL GFEHPETGKQ VEYESEYPED
LAHALEVIRD AH
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