Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_2917 |
Symbol | |
ID | 4597418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 3097623 |
End bp | 3099620 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639777522 |
Product | short chain dehydrogenase |
Protein accession | YP_924106 |
Protein GI | 119717141 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities [COG3320] Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes |
TIGRFAM ID | [TIGR01746] thioester reductase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0126943 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTACT TCGTGACGGG GGCCACAGGG TTCATCGGCC GGCACCTGGT CCGGGAGCTG ATCGACCGCC GGGACGGTGA GATCCACGTC CTGGTCCGCG CGGGCTCGTT GCACCGCATG GAGGCGCTGA TCGCGCGCTG GGACACCGAC CGGGTGGTGC CCGTCGTCGG TGACCTGGCC GCCGACGCGC TCGGCGTCGA CCCGGCGTGG GTGGCCGAGC ACCGTGGCGA GATCGACCAC TTCTTCCACG TCGCCGCGAT CTACGACATG ACCGCGGACG ACGAGACCAA CGAGACGATG AACGTCGGCG GCACCCGCAA CGCGCTGGCG CTCGCCGAGG CGCTGGACGC CGGCTGCTTC CACCAGGTGT CCTCCGTGGC CGCGGCCGGG GAGTACCGCG GCCGCTTCGA CGAGACGATG TTCGACGAGG GGCAGCACCT GCCCTCGCCG TACCACCGCA CCAAGTTCGA GTCCGAGCGG ATCGTGCGCG AGGAGGGTGG AGTGCCCTGG CGGGTCTACC GCCCCGCGAT CGTGGTCGGC GCCTCCGACA CCGGCGAGAT GGACAAGGTC GACGGGCCCT ACTACTTCTT CGCCGCGATG AAGGCGATGC GCGACCGGCT CCCCTCCTGG CTGCCGCTGG TGGGCGTCGA CCTCGGCGAC ACCAACGTCG TCCCGGTCGA CTACGTCGCG GCGGCGATCG ACCACCTCGC GCACGTGCCC GACCGCGACG GCGAGGCGTT CCACCTGGTC AACCCCGAGC CGCAGCCGGT GGTGGACATG GTCAACGCGT TCTGCGCCGC GGCCGGGGCG CCGCGGTTCG CGACGCCGCT GGACCGTGGC CTCACCCGGC GCCTGCCGGA GGCGCTGAGG CCGGCCGGCC TGCTCAACAC GCTGGCCAAG AACGGCGCCG TGCAGTCGGC CCTCGACCTG GTGACCAGCC GGGTCGGCGT ACCGGCCGAG GTGCTCGCGC ACACGTCGTT CACGGCGGTC TTCGACTCCC GGCGCACCGA GCAGGCGCTG GCCGGGTCCG GCATCGGCGT CCCCGACCTC GAGTCCTACG CCCGCACCCT GTGGACCTAC TGGGAGGAGC ACCTCGACGA GTCCACGGGG CGCGACGCGC GGGTGCGCGA GAAGCTCCAT GGCAAGTACG TCGTCGTCAC CGGCGCCTCC TCCGGGATCG GCAAGGTCAC CGCGCTCAAG GTCGCCCAGG CCGGCGGCAC CCCGGTCCTG GTCGCCCGCG GCAAGGAGAA GCTGGACGAG CTGCGCGGCC TGATCGAGTC CCGCGGCGGC ACCGCCATCG TGCAGCCCTG CGACCTCTCC GACCTCGAGG CCATCGACGC CCTGTGCGAG ACGCTGACGA CCGAGTTGCC GTCGATCGAC TTCGTCGTCA ACAACGCCGG CCGCTCGATC CGCCGCTCGC TCCGGCTCTC GCAGGACCGC TTCCACGACT TCGAGCGGAC CATGCAGCTC AACTACTTCG GGGCGGTGCG CCTGGTGATG GGGCTGATCC CCGCCATGCG CGCCAACCGC AGCGGGCACG TCGTGAACAT CTCCTCGATC GGGGTGCAGA CGAACCCGCC GCGGTTCTCG GCGTACGTCG CCTCCAAGGC CGCGCTCGAC TCCTGGAGCA ACGTGGTCTC CTCCGAGCTG GTCGGCGACG GGATCACGTT CACCAACATC CACATGCCTC TCGTGCGGAC GCCGATGATC GCCCCGACCA AGCTCTACGA CAAGTTCCCC ACGATCTCAC CCGCGCAGGC AGCGGACCTG GTGATCGAGG CGATGGTCGA GCGTCCCCAC GAGATCAACA CGCTGCTCGG CAACGCGGGC GCCGTCGCCC ACACGCTCAC CCCGAAGCTC GCGTTCCGGG TGCTCAACCT GGCCTACCAC GTGTTCCCGG ACTCGGCGGC CGCTCAGGGG AGGACACCCG GCGAGGGCGG CACCCGCGAG TCGGAGCAGA TCATGCTCGC GAAGGTGTTC AAGGGCGTGC ACTGGTAG
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Protein sequence | MSYFVTGATG FIGRHLVREL IDRRDGEIHV LVRAGSLHRM EALIARWDTD RVVPVVGDLA ADALGVDPAW VAEHRGEIDH FFHVAAIYDM TADDETNETM NVGGTRNALA LAEALDAGCF HQVSSVAAAG EYRGRFDETM FDEGQHLPSP YHRTKFESER IVREEGGVPW RVYRPAIVVG ASDTGEMDKV DGPYYFFAAM KAMRDRLPSW LPLVGVDLGD TNVVPVDYVA AAIDHLAHVP DRDGEAFHLV NPEPQPVVDM VNAFCAAAGA PRFATPLDRG LTRRLPEALR PAGLLNTLAK NGAVQSALDL VTSRVGVPAE VLAHTSFTAV FDSRRTEQAL AGSGIGVPDL ESYARTLWTY WEEHLDESTG RDARVREKLH GKYVVVTGAS SGIGKVTALK VAQAGGTPVL VARGKEKLDE LRGLIESRGG TAIVQPCDLS DLEAIDALCE TLTTELPSID FVVNNAGRSI RRSLRLSQDR FHDFERTMQL NYFGAVRLVM GLIPAMRANR SGHVVNISSI GVQTNPPRFS AYVASKAALD SWSNVVSSEL VGDGITFTNI HMPLVRTPMI APTKLYDKFP TISPAQAADL VIEAMVERPH EINTLLGNAG AVAHTLTPKL AFRVLNLAYH VFPDSAAAQG RTPGEGGTRE SEQIMLAKVF KGVHW
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