Gene Noca_2565 details

Gene Information

• Locus tag: Noca_2565
• ID: 4598422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 2733647
• End bp: 2735530
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639777171
• Product: ABC transporter related
• Protein accession: YP_923756
• Protein GI: 119716791
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.333198
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGGGGA TGCACGGAGG CGGGGCCGCC TGGCGACTGC TGCGGTCGGA CCGCAGCATC 
GTCCACAACC GGCTCGAGCG CGGCACGGTA CGCCGCGTGG TCGGCTTCGC CCGACCGCAC 
CGCAGGCTGA TCGGCGTCTT CCTGGTGCTG ACCGTGATCG ACGCCGGCCT CGTCGTGGTC 
AGCCCGCTCC TGGCCAAGAG CATCATCGAC GACGGGATCA AGCAGGGCGA CCGCACCCTG 
ATCACGCTGC TCGCGCTCGC GATGGCCGCG ACCGCCCTGG TCAGCGCCGT GCTCGCGGTC 
GGTGTGGGCT GGCTCTCGTC CCGCATCGGT GAGGGCCTGA TCTACGACCT GCGGACCCGC 
GTGTTCGCCC ACGTGCAACG TCAGTCGCTC GCGTTCTTCA CCCGCACCCA GACCGGGGCC 
CTGGTCTCCC GGCTGAACAA CGACGTGATC GGGGCGCAGC GCGCCTTCAC CTCGACGCTC 
TCCACGACGG TCGCCAGCAC CATCTCGGTG GTGGTCGTCG GCATCACCAT GGTCGCCCTG 
AGCTGGCAGG TGACCCTCCT CTGCCTGGCG ATCTTCCCGC TCCTGGTGCT GGTCTCGCGG 
TGGGTGAGCG CCCGCCTCGC CGGCCTGACC CGTGACCAGA TGGACGGCAA CGCCGACATG 
GGCAACGCGA TGACCGAGCG GTTCAACGTC GGCGGCGCGA TGTTGCTCAA GCTGTTCGGG 
CGCCGAGCCG ACGAGGATGC GCTGTTCGCC GTCAAGGCCG CCCGGGTCCG CGACCTGGGG 
GTCCGGATCA CGCTGCTCAC CCGCCTGTTC GGGGCCTCGA TGATGGCCGT CCCGGCGCTG 
GCGACCGCAC TGGTCTACGG GCTCGGCGGA CAGCTCGTCG TCGACGAGAC GCTCACGGTC 
GGCACCCTCA TCGCCCTCGC CACCCTGCTC CTGCGGCTCC TCGGGCCGTT GCAGAGCCTC 
TCGAACGTCC GGATCGACGT GATGACCGCG CTCGTGAGCT TCGAGCGGGT CTTCGAGGTG 
CTCGACCTGC CCTCGCTGAT CGAGGAGCGG CCGGACGCGA CGAGGCTGCC TCCGGGCGCC 
GCCCGCCTGG AGTTCGACCA CGTCGCGTTC GCCTACCCCC GCGCGGACGA GATCTCGCTC 
GCCTCGCTCG AGGTGGTCGC CCGCAGCGAG TCCCGGGACA CCGGCCAGGT GCTCACCGAC 
ATCAGCTTCA CCGCCGAGCC GGGCCAGATG GTCGCGCTCG TGGGTCCCTC CGGTGCCGGC 
AAGACCACCG TCACCCACCT CGTCGCCCGC CTGTACGACG CCGGCGCCGG GTCGGTGCGG 
GTCGGCGGCC ACGACGTACG TGACGTGACC CTGCAGTCGC TGGAGGACGC CGTCGGCTAC 
GTCACCCAGG ACGCGCACAT GTTCCACGAC ACGATCCGCG CCAACCTGCT CTACGCCCGC 
CCGGGCGCCA CGGACCCGGA GGTCTGGGCG GCGCTGGAGG CCGCTCAGAT CGCCACCCTG 
GTGCGCGGGC TGCCGGACGG CCTGGACACG GTCGTCGGCG ACCGCGGCTA CCGGCTCTCC 
GGAGGCGAGC GGCAGCGGCT GGCGATCGCG CGGCTCCTCC TGAAGGCCCC GGCGATCGTC 
GTGCTCGACG AGGCGACCGC GCACCTGGAC AGCGAGTCCG AGGCCGCGGT CCAGCGGGCG 
CTGGACGCGG CGCTCGAGGG CCGCACGTCG CTGGTGATCG CGCACCGGTT GTCCACGATC 
CGCGACGCCG ACCAGATCCT CGTGCTCGAC GACGGCCGGA TCGTCCAGTC CGGCACTCAC 
GCGGAGCTGC TCGCCCGGGG CGGCCTGTAC GCCGACCTGT ACCGCACCCA GTTCATCGAG 
GACCAGCCGT CCGCGACGGT CTGA 

 

Protein sequence

MSGMHGGGAA WRLLRSDRSI VHNRLERGTV RRVVGFARPH RRLIGVFLVL TVIDAGLVVV 
SPLLAKSIID DGIKQGDRTL ITLLALAMAA TALVSAVLAV GVGWLSSRIG EGLIYDLRTR 
VFAHVQRQSL AFFTRTQTGA LVSRLNNDVI GAQRAFTSTL STTVASTISV VVVGITMVAL 
SWQVTLLCLA IFPLLVLVSR WVSARLAGLT RDQMDGNADM GNAMTERFNV GGAMLLKLFG 
RRADEDALFA VKAARVRDLG VRITLLTRLF GASMMAVPAL ATALVYGLGG QLVVDETLTV 
GTLIALATLL LRLLGPLQSL SNVRIDVMTA LVSFERVFEV LDLPSLIEER PDATRLPPGA 
ARLEFDHVAF AYPRADEISL ASLEVVARSE SRDTGQVLTD ISFTAEPGQM VALVGPSGAG 
KTTVTHLVAR LYDAGAGSVR VGGHDVRDVT LQSLEDAVGY VTQDAHMFHD TIRANLLYAR 
PGATDPEVWA ALEAAQIATL VRGLPDGLDT VVGDRGYRLS GGERQRLAIA RLLLKAPAIV 
VLDEATAHLD SESEAAVQRA LDAALEGRTS LVIAHRLSTI RDADQILVLD DGRIVQSGTH 
AELLARGGLY ADLYRTQFIE DQPSATV