| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2376 |
|---|
| Symbol | |
|---|
| ID | 4599476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2532004 |
|---|
| End bp | 2533134 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639776979 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_923568 |
|---|
| Protein GI | 119716603 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAGGA TCCAGGGGGC GCGGCTCGCG TCCCTCGTTG CAGTAGGAGC GCTCGCCTTC
GGGTCGCTCG CCGCGTGCGG CAGCGACTCC GACGGCGGCG ACACCGGCAG TGAGAGCACC
AACGGCACCA GCGAGTCGTC CGCACCGGAG GTCACCGGGA AGGTCGGCGT GATCCTTCCG
GACTCGAAGA CCTCGGTCCG CTGGGAGACG CAGGACCGGC CGAACCTCGA GGCCGCCTTC
AAGGCAGCGG GCCTGGAGTC GATCATCCAG AACGCCGAGG GCTCGCCGGA CACGTTCGGT
CAGCTCTGTG ACCAGATGAT CACCGAGGGC GTCCAGGTCC TCATCGAGAC CGACCTCGAC
CCGGACTCGG GCAAGGCCTG CATCGACAAG GCCAAGAACG CGGGCATCGC CGTCATCGAC
TACGACCGTC TCACCCTGGG CGGCGGCGCG GACTACTACG TGTCGTTCGA CAACGTGAAG
GTCGGCGCGC TGCAGGGTCA GGGCCTCATC GACGCCCTCC AGGCCAAGGG CGAGAAGAGC
GGCAACATCG CCTTCATCAA CGGCGCCGCG ACCGACAACA ACGCCACGCT GTTCAAGCAG
GGCTACGAGC AGGTCATCAA GGACGACGGC AGCTACACGG TCGTCGGCGA CCAGACCGGT
GAATGGGACC CGGACACCGC CGGCAAGGTC TTCGACCAGT TCTACGCCGC GCACCCCGAC
CTGGTCGGGC TCGTCACCGC CAACGACGGG ATGGCCGGTG GCGTCATCGC CCGTGAGAAG
GCCGCGGGCG TCGAGGGCAA GATCCTGGTG ACCGGCCAGG ACGCGACCGC CGAGGGTCTC
GCCAACGTGC TGCTGGGCTA CCAGGCCGGC ACCGTCTTCA AGGACACCTC GATCGAGGCC
AAGGCCGCTG CCGACCTGGC GATCGCGATC ATCAAGGGCG AGGACCCGTC GACGATCGCG
ACCGGCTCCG TCAACGACTC GGTGCTCGGT GTCGACGTGC CGTCGGTGCT CGCCACCCCG
GTCTGGATCA CCGCGGACAC GGTCAAGGAC GTGGTCGCCG CCGGCCAGGC GAACGCCGCC
GACATCTGCA AGGGTATCGA GGACCTCTGC AAGAAGTACG GAGTCGCGTG A
|
|---|
| Protein sequence | MVRIQGARLA SLVAVGALAF GSLAACGSDS DGGDTGSEST NGTSESSAPE VTGKVGVILP
DSKTSVRWET QDRPNLEAAF KAAGLESIIQ NAEGSPDTFG QLCDQMITEG VQVLIETDLD
PDSGKACIDK AKNAGIAVID YDRLTLGGGA DYYVSFDNVK VGALQGQGLI DALQAKGEKS
GNIAFINGAA TDNNATLFKQ GYEQVIKDDG SYTVVGDQTG EWDPDTAGKV FDQFYAAHPD
LVGLVTANDG MAGGVIAREK AAGVEGKILV TGQDATAEGL ANVLLGYQAG TVFKDTSIEA
KAAADLAIAI IKGEDPSTIA TGSVNDSVLG VDVPSVLATP VWITADTVKD VVAAGQANAA
DICKGIEDLC KKYGVA
|
|---|
| |