| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2246 |
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| Symbol | |
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| ID | 4597792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 2396507 |
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| End bp | 2398027 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639776845 |
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| Product | Type IV secretory pathway VirD4 components-like |
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| Protein accession | YP_923438 |
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| Protein GI | 119716473 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCGCC CCGTGCGGGG ACAGCGTTCC CGAGGTGGCG CGATGAAGCT GAGGTTCGAC
CCCTGGGACG TGGGCTGGCG CATCGGTAAC GCCCACGAGC CGCGAGGCGG CGAGCTGTGG
GTCCCGTGGG ACCGCACCGC CGGCGTAATC GGCCCGCAGG GATCCGGCAA GACCCTCGAC
CTGCTCACCC CTGCACTGCT CGGCGCTCCG GGTGCCGCCC TGGTGACACT GACGAAGGTC
GAGGACCTGC TGCTCAGCCT CACCGAACGC TCCCGCGACG ACCGGCCCTG CGTGGTGCTC
GACCCCTTCG GCCTGGCCGA GGGCGTCGTC GACGAGCTGA TCTGGGACCC GATCGCCGGC
TGCGTAGACC CCAAGGTCGC CGAGCGGCGC GCCAAGGCTT TCACCGCCGG CACCGTCAAG
GGCGCGATCA CCGGCGGCAC CGGCGACGAT GCTGCGCGGT TCTACGCCGC CGAGTCCGCG
AAGGTGCTGC AGGGCTACTT CCACGCCGCG GCGCTGACCG GTAGGACGCT CGAGGACGTG
CTGCAGTGGG TCGCCAACCC CACCGCAGCC ACCCAGCCGA TGGAGATCTT GCGGCGGCAC
CCGCACGCCG AGCCGTTCTG GCACGGCCTC CTGCACGGTG CGCTGAACGG TGACGACCGC
ACCGCCGGCA ACACCGTCAC CACGGTGCAG CAGGCGGTCT CGCTGTTCTT CCAGGCCGAC
ATCCGCCGCC GCTGCATTCC CAGCCCCGGA CGTCCCGCCA CCGACCTCGC CGACGTGATC
CGTCGACGCG GCACCATCTA CCTGCTCGGC CGCGAAGACC CCTACGCCTC GGCCAGCCCG
CTGATGACCG CCGTGGCCGA GCACGTCTTG GACACCGGCC TGCTCCTGGC CAACAGCTCC
CCGCGGGGCG GCCGGCTGTG CCCGCCCCTG GTCTCGGTGC TCGACGAGCT GCCGTCGACC
GCGCCGCTTC CGACCCTCCG TACCCGAATG GCCAACGAGC GCGCCCTGGG GCTGTCGTTC
ATTTGGGCCG CCCAGACTCG GCCCCAGCTG ACCAGCATCT TCGGTGAGCA CGAGGCCCGA
GCACTGCTCG GCCTCACCAA CGCCCTGGTG ATGTTCGGCG GCTCCAAGGA CGTCGCCTTC
AACCAGGAGA TCTCCGACCT CCTCGGAACG GTCCGCATCG GGCGGGTCAC CCACTCCACC
GGCGGAGCCA GTGGCGGTGG GCGCAGCTTC TCCGGCGACG ACATCCCGAT CATGCGGCCG
GAGGAAGTCC GGCAACTGCC CGAACGCCAA GCTCTGGTCG TCGCCGAGAA CGGCAAGCCG
ATCATCGCCA AGCTGCACCG CTGCGTCGAA GGCAAGGCAG GGGAGCGCCT GCTGGCCGAC
CAGCGGGCGC TGCGCGAGCG CCTCACCAAC GACCGGCGCA TGGTCATCAC CCCCGAGGCC
CGAGCCACCG CCGCGCTCGT CGAGGCGCGC CGTCTCGGTT TCGTCGACGA CGAGACCGAC
CACGCAAGGA GTGAACTGTG A
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| Protein sequence | MPRPVRGQRS RGGAMKLRFD PWDVGWRIGN AHEPRGGELW VPWDRTAGVI GPQGSGKTLD
LLTPALLGAP GAALVTLTKV EDLLLSLTER SRDDRPCVVL DPFGLAEGVV DELIWDPIAG
CVDPKVAERR AKAFTAGTVK GAITGGTGDD AARFYAAESA KVLQGYFHAA ALTGRTLEDV
LQWVANPTAA TQPMEILRRH PHAEPFWHGL LHGALNGDDR TAGNTVTTVQ QAVSLFFQAD
IRRRCIPSPG RPATDLADVI RRRGTIYLLG REDPYASASP LMTAVAEHVL DTGLLLANSS
PRGGRLCPPL VSVLDELPST APLPTLRTRM ANERALGLSF IWAAQTRPQL TSIFGEHEAR
ALLGLTNALV MFGGSKDVAF NQEISDLLGT VRIGRVTHST GGASGGGRSF SGDDIPIMRP
EEVRQLPERQ ALVVAENGKP IIAKLHRCVE GKAGERLLAD QRALRERLTN DRRMVITPEA
RATAALVEAR RLGFVDDETD HARSEL
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