| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1718 |
|---|
| Symbol | |
|---|
| ID | 4598480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 1821358 |
|---|
| End bp | 1824096 |
|---|
| Gene Length | 2739 bp |
|---|
| Protein Length | 912 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639776317 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_922918 |
|---|
| Protein GI | 119715953 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGTGA TGGTGTGGCG GCGACTGTGG CGGGGTGGCT CTCGGACGCT GGTGCTGGGC
TTTGCGATCT TGGTGGCGGC GACCGGATTC ACGGTGCTGA CCGGGGCGTC GAACGCGGAG
CGCCTGGACA CCGTGGGTAC GGTCGCAGAA GCGTCGCAGA AGACCTATGA CGTCCTGGTC
CGCCCACCGG GGACGCGGTC GGACCTTGAG GAGCAGGAGG GGCTCATCGA GCCCGGTTTC
CTCACCGGCA TCTATGGCGG CATCACGTTG CGGCAGTGGC ACGAGATCCA AGACGTCCCC
GGCGTGGAGG TTGCGGCACC GATCGCGATG CTGGGCTACG CCTATCCCGC GCTCCAGATT
CCGGTGGACG CGACAGCGGC CTGGTCGCCG CGAGGTACCT CGGTCGCGCG GGTGGATGTT
ACCTGGGCGG GTGACAATGG CCTGACGGTC ACCCGGGAGA GCCCTCAGTT CACAGTGATC
ACCGACCATG CGCTGCGTCC GAACACAGGC GCGGGTTTGG GGGAAGGGCC GTGGCTGTTC
AAGGACGGCA CCGGCAAGTC TCGCGCGATC TGTCCGGTCG AACCTTCCGA CGAGGTGTCG
CCAGAGAAGA GGCCGGCGAA CTTGCTGTGC TTCTCTCGCA CGAAGGGCGG CATGGGTCAC
GGTCACGTCG GTGAGGAGTT CGCACGAGAC GGTGTCCGCG GGGCGATGGT GGACTTCCCG
TTCTCCTATG TGATCGCGGC GGTTGACCCG GCCAGTGAGG ACGCGTTGGT GGGTCTCGAC
GGCGCGGTGA CCTCCGGCGA TCCACTGACC GGGGCCTCGG TCAAGTACCC GGACTCGGTG
GATGGCAAGG GCGTGCCCGT GCTGGTCTCG GACGAGCCCG GGGTCGACGA GACGGCGACT
ATCACGCTGT CAGGCCTTCC GGATTCCGCC GGCCGGGCCG TGCTGGCAGG AGCCGGCACC
GGGGATCTGG TGAAGCTGCC AGCCAGCCTG GTCACCACAC AAGTAGTCGA CGCCGCGGCC
GCCCAGGCAC AGCTCATGGA GGCATTCCGC ACGACGAAGC CGATCGACGG CCAACGCCGT
CCGACCCGTT TCCTCCCCGG TGAGATCACC CAGCTCGGAC AGGTGGGGAT GCCGCGCCTG
GCGGTGACCT CGGAGCGTCT CGAGGTCGAA CTGCGGAAGC AGCCGCCAGG GTTCGACCTC
GCCGCTCGGG CACCAGCAAG CGGAGAACCG GCCGCGAGAG AGGTAACCAA CTCGGCCAAG
GAGCCCGCGG TCGCCGGCAC ACCGGCCTCC CCCGCAACCC TGCGACTGCA GGGGACCTTC
GATCCCGCCG AGCTCAGCCA TATCACGGAT CTGACCGACG AGGTCCTCGC CGGATACTCG
GCAGCGCCGA CCGAGGGAGC GGACCGGGCC AGTACGAACG CCCTCGGCAA CCGGCCGTTG
GCACCCTCGA CCGACCTGGG TGGACTGGTC CAACCGCCGC CGACGATGGT CACCACTCTC
GAGGCCATCC CGCAGTTGAC CCGCGGCTGG AGCGGGGCGG CGGCCTCCGC GCCTATCTCC
GCGGTCCGCG TCCGGGTGGC CGATGCAAGC GTCGCGGATG AGGTCTCCCG GGAGCGGATC
AGGATCGTCG CCCAGCGCAT CAAGGATGCG ACCGGCCTCG ACGTCGACAT CACAACGGGC
TCCTCTGCAG GTGCTCAGGG CCTGCTCTTG CCCGCAGGTG ACCACGGTCG GCCGCAACTG
GCGCTCCAGC AGTGGTGGGT GACCAAGGGG GTCGCAACGA GGATCCTCAC CGCAGTCGAC
AAGAAGTCGC TCGCCCTGTT CGCGCTGGTG CTGCTCGTCT CAGCCTTGTC GATAGCAAAC
GCCGCGGTCG CGGCTGTCCG GGCCCGTCGT ACCGAGCTCG GCGTCCTAGC GAGCCTGGGC
TGGAGCAAGG CGCAACTCTT CCGAGCGGTC GGCTACGAGC TCCTCGTCGT GGCGTGCGTC
GCCGGCCTGG CCAGCGCCGT GCTCTCCTGG GTGCTCGGTC GTGCTCTTGG GTCCGCCGTG
GATCTGCCAC GGGCGGCGCT CGCGCTCCCG ATCGCCATCG GCGTCGCCGT TGTCGCGGGT
GCCGTGCCCG CCACTGTGGC CGCCCGGGCC GATCCGATCG AGGCGGTGCG GCCCGCCGTG
AGCGAGGCAC GCCGTCCGCA CCATGCCGCT CGCGTCATCG GGCTCGCCTG GCTCAATCTC
GGGCTGTCAC GGACCAGGAG CGCCCTGGCC GGGATCGGTC TGATGATCGC GGTCGCCACC
GCCACGCTCC TGGCCGCGAT CGTTCTCGGT TTCCAGGGTG CGATCGTGGG GACTGTCCTC
GGCGAGACCG TCTCCATCCA GACCCGGACC GTCGACATCG TCGCCACGAT CGCGACATTG
CTCCTCGGTT GCCTCGGCGT GGCGAACGTG ATGTACCTCA ATATCCGAGA CCGCGGGACC
GAGCTGGCCA CGCTGCGGGG GATCGGATGG GCCGAAGGTC AGCTCAGGTA CCTGATCACC
GCGGAGGGGG CCATGCTCGG TGTCCTCGGT GCCACCCTGG GCGGGCTGAT CGGCCTGGGG
GTCACGGCCG TGGTCGCCGG AGACCTCACC TCGATCGTGA TCGGATGGGC TGTTGCGGTC
TGGGCCGTCT CCAGCCTCCT TGCCGCGCTG TCGGCCTTGG CCGCCACCGC AATGGTCACT
CACATCCCGA CCGCCGAGCT GTTGACGGAG GACGCATGA
|
|---|
| Protein sequence | MWVMVWRRLW RGGSRTLVLG FAILVAATGF TVLTGASNAE RLDTVGTVAE ASQKTYDVLV
RPPGTRSDLE EQEGLIEPGF LTGIYGGITL RQWHEIQDVP GVEVAAPIAM LGYAYPALQI
PVDATAAWSP RGTSVARVDV TWAGDNGLTV TRESPQFTVI TDHALRPNTG AGLGEGPWLF
KDGTGKSRAI CPVEPSDEVS PEKRPANLLC FSRTKGGMGH GHVGEEFARD GVRGAMVDFP
FSYVIAAVDP ASEDALVGLD GAVTSGDPLT GASVKYPDSV DGKGVPVLVS DEPGVDETAT
ITLSGLPDSA GRAVLAGAGT GDLVKLPASL VTTQVVDAAA AQAQLMEAFR TTKPIDGQRR
PTRFLPGEIT QLGQVGMPRL AVTSERLEVE LRKQPPGFDL AARAPASGEP AAREVTNSAK
EPAVAGTPAS PATLRLQGTF DPAELSHITD LTDEVLAGYS AAPTEGADRA STNALGNRPL
APSTDLGGLV QPPPTMVTTL EAIPQLTRGW SGAAASAPIS AVRVRVADAS VADEVSRERI
RIVAQRIKDA TGLDVDITTG SSAGAQGLLL PAGDHGRPQL ALQQWWVTKG VATRILTAVD
KKSLALFALV LLVSALSIAN AAVAAVRARR TELGVLASLG WSKAQLFRAV GYELLVVACV
AGLASAVLSW VLGRALGSAV DLPRAALALP IAIGVAVVAG AVPATVAARA DPIEAVRPAV
SEARRPHHAA RVIGLAWLNL GLSRTRSALA GIGLMIAVAT ATLLAAIVLG FQGAIVGTVL
GETVSIQTRT VDIVATIATL LLGCLGVANV MYLNIRDRGT ELATLRGIGW AEGQLRYLIT
AEGAMLGVLG ATLGGLIGLG VTAVVAGDLT SIVIGWAVAV WAVSSLLAAL SALAATAMVT
HIPTAELLTE DA
|
|---|
| |